Regulog BglR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Beta-glucosides utilization |
| Effector: | Beta-glucoside |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - LacI
- By effector - Beta-glucoside
- By pathway - Beta-glucosides utilization
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | ||
| Shewanella putrefaciens CN-32 | ||
| Shewanella sp W3-18-1 | ||
| Shewanella sp ANA-3 | ||
| Shewanella sp MR-4 | ||
| Shewanella sp MR-7 | ||
| Shewanella baltica OS155 | 6 | 2 |
| Shewanella denitrificans OS217 | 7 | 3 |
| Shewanella frigidimarina NCIMB 400 | 7 | 3 |
| Shewanella amazonensis SB2B | 9 | 4 |
| Shewanella loihica PV-4 | ||
| Shewanella pealeana ATCC 700345 | ||
| Shewanella halifaxensis HAW-EB4 | ||
| Shewanella piezotolerans WP3 | 10 | 4 |
| Shewanella sediminis HAW-EB3 | ||
| Shewanella woodyi ATCC 51908 | 7 | 3 |
| Genes | Function | ||||||||||||||||
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| CRON 1. | |||||||||||||||||
| Sden_2610 |
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Shewanella denitrificans OS217 Site: position = -143 score = 6.80819 sequence = TATGTAAGCGCTTACATT Site: position = -304 score = 6.31127 sequence = AAAGAAAGCGCTTACATT Gene: Sden_2610: Predicted beta-glucoside specific TonB-dependent outer membrane receptor |
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Predicted beta-glucoside specific TonB-dependent outer membrane receptor |
| omp(Bgl) |
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Gene: Sbal_1125: Predicted beta-glucoside specific TonB-dependent outer membrane receptor |
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Shewanella frigidimarina NCIMB 400 Site: position = -143 score = 6.80819 sequence = TATGTAAGCGCTTACATT Site: position = -304 score = 6.31127 sequence = AAAGAAAGCGCTTACATT Gene: Sfri_1313: Predicted beta-glucoside specific TonB-dependent outer membrane receptor |
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Shewanella amazonensis SB2B Site: position = -116 score = 6.80819 sequence = TATGTAAGCGCTTACATT Gene: Sama_1399: Predicted beta-glucoside specific TonB-dependent outer membrane receptor |
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Shewanella piezotolerans WP3 Site: position = -63 score = 6.25371 sequence = TTTGTAAGCGCTTACATT Site: position = -108 score = 5.49871 sequence = TGTGTAAGCGCTTACAAA Gene: swp_1631: Predicted beta-glucoside specific TonB-dependent outer membrane receptor |
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Shewanella woodyi ATCC 51908 Site: position = -109 score = 6.45425 sequence = AATGTAAGCGCTTACAAT Gene: Swoo_1144: Predicted beta-glucoside specific TonB-dependent outer membrane receptor |
Predicted beta-glucoside specific TonB-dependent outer membrane receptor |
| CRON 2. | |||||||||||||||||
| bglA1 |
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Shewanella baltica OS155 Site: position = -147 score = 6.86574 sequence = AATGTAAGCGCTTTCATT Gene: Sbal_1131: Cytoplasmic beta-glucosidase (EC 3.2.1.21) |
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Shewanella denitrificans OS217 Site: position = -177 score = 6.86574 sequence = AATGTAAGCGCTTTCATT Gene: Sden_2607: Cytoplasmic beta-glucosidase (EC 3.2.1.21) |
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Shewanella frigidimarina NCIMB 400 Site: position = -176 score = 6.86574 sequence = AATGTAAGCGCTTTCATT Gene: Sfri_1316: Cytoplasmic beta-glucosidase (EC 3.2.1.21) |
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Shewanella amazonensis SB2B Site: position = -134 score = 6.86574 sequence = AATGTAAGCGCTTTCATT Gene: Sama_1402: Cytoplasmic beta-glucosidase (EC 3.2.1.21) |
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Shewanella piezotolerans WP3 Site: position = -294 score = 6.86574 sequence = AATGTAAGCGCTTTCATT Site: position = -233 score = 6.86574 sequence = AATGTAAGCGCTTTCATT Gene: swp_1634: Cytoplasmic beta-glucosidase (EC 3.2.1.21) |
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Shewanella woodyi ATCC 51908 Site: position = -199 score = 6.35055 sequence = GATGTAAGCGCTTTCATT Gene: Swoo_1147: Cytoplasmic beta-glucosidase (EC 3.2.1.21) |
Cytoplasmic beta-glucosidase (EC 3.2.1.21) |
| bglT |
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Gene: Sbal_1130: Predicted beta-glucoside transporter, GPH family |
Gene: Sden_2608: Predicted beta-glucoside transporter, GPH family |
Gene: Sfri_1315: Predicted beta-glucoside transporter, GPH family |
Gene: Sama_1401: Predicted beta-glucoside transporter, GPH family |
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Gene: swp_1633: Predicted beta-glucoside transporter, GPH family |
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Gene: Swoo_1146: Predicted beta-glucoside transporter, GPH family |
Predicted beta-glucoside transporter, GPH family |
| bglR |
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Gene: Sbal_1129: Transcriptional regulator of beta-glucosides utilization, LacI family |
Gene: Sden_2609: Transcriptional regulator of beta-glucosides utilization, LacI family |
Gene: Sfri_1314: Transcriptional regulator of beta-glucosides utilization, LacI family |
Gene: Sama_1400: Transcriptional regulator of beta-glucosides utilization, LacI family |
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Gene: swp_1632: Transcriptional regulator of beta-glucosides utilization, LacI family |
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Gene: Swoo_1145: Transcriptional regulator of beta-glucosides utilization, LacI family |
Transcriptional regulator of beta-glucosides utilization, LacI family |
| CRON 3. | |||||||||||||||||
| bglT2 |
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Shewanella piezotolerans WP3 Site: position = -100 score = 6.45425 sequence = AATGTAAGCGGTTACATT Gene: swp_4298: Sugar:cation symporter family protein |
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Sugar:cation symporter family protein |
| celP |
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Gene: swp_4297: Cellobiose phosphorylase |
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Cellobiose phosphorylase |
| gntK |
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Gene: swp_4296: Gluconokinase (EC 2.7.1.12) |
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Gluconokinase (EC 2.7.1.12) |
| CRON 4. | |||||||||||||||||
| lamA |
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Shewanella amazonensis SB2B Site: position = -97 score = 7.00872 sequence = AATGTAAGCGCTTACATT Gene: Sama_1396: Beta-glucanase precursor (EC 3.2.1.73) |
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Gene: Swoo_4376: Beta-glucanase precursor (EC 3.2.1.73) |
Beta-glucanase precursor (EC 3.2.1.73) |
| omp(Bgl) |
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Gene: Sama_1397: Predicted beta-glucoside specific TonB-dependent outer membrane receptor |
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Gene: Swoo_4375: Predicted beta-glucoside specific TonB-dependent outer membrane receptor |
Predicted beta-glucoside specific TonB-dependent outer membrane receptor |
| CRON 5. | |||||||||||||||||
| glcP |
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Shewanella baltica OS155 Site: position = -138 score = 6.86574 sequence = AATGAAAGCGCTTACATT Gene: Sbal_1132: Predicted glucose transporter in beta-glucoside utilization gene cluster |
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Shewanella denitrificans OS217 Site: position = -195 score = 6.86574 sequence = AATGAAAGCGCTTACATT Gene: Sden_2606: Predicted glucose transporter in beta-glucoside utilization gene cluster |
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Shewanella frigidimarina NCIMB 400 Site: position = -224 score = 6.86574 sequence = AATGAAAGCGCTTACATT Gene: Sfri_1317: Predicted glucose transporter in beta-glucoside utilization gene cluster |
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Shewanella amazonensis SB2B Site: position = -111 score = 6.86574 sequence = AATGAAAGCGCTTACATT Gene: Sama_1403: Predicted glucose transporter in beta-glucoside utilization gene cluster |
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Shewanella piezotolerans WP3 Site: position = -252 score = 6.86574 sequence = AATGAAAGCGCTTACATT Site: position = -191 score = 6.86574 sequence = AATGAAAGCGCTTACATT Gene: swp_1636: Predicted glucose transporter in beta-glucoside utilization gene cluster |
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Shewanella woodyi ATCC 51908 Site: position = -127 score = 6.35055 sequence = AATGAAAGCGCTTACATC Gene: Swoo_1148: Predicted glucose transporter in beta-glucoside utilization gene cluster |
Predicted glucose transporter in beta-glucoside utilization gene cluster |
| bglA2 |
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Gene: Sbal_1133: Periplasmic beta-glucosidase (EC 3.2.1.21) |
Gene: Sden_2605: Periplasmic beta-glucosidase (EC 3.2.1.21) |
Gene: Sfri_1318: Periplasmic beta-glucosidase (EC 3.2.1.21) |
Gene: Sama_1404: Periplasmic beta-glucosidase (EC 3.2.1.21) |
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Gene: swp_1637: Periplasmic beta-glucosidase (EC 3.2.1.21) |
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Gene: Swoo_1149: Periplasmic beta-glucosidase (EC 3.2.1.21) |
Periplasmic beta-glucosidase (EC 3.2.1.21) |
| lamA |
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Gene: Sden_2604: Beta-glucanase precursor (EC 3.2.1.73) |
Gene: Sfri_1319: Beta-glucanase precursor (EC 3.2.1.73) |
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Gene: swp_1638: Beta-glucanase precursor (EC 3.2.1.73) |
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Beta-glucanase precursor (EC 3.2.1.73) |
| glk |
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Gene: Sbal_1134: Glucokinase, ROK family (EC 2.7.1.2) |
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Gene: Sfri_1321: Glucokinase, ROK family (EC 2.7.1.2) |
Gene: Sama_1405: Glucokinase, ROK family (EC 2.7.1.2) |
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Gene: Swoo_1150: Glucokinase, ROK family (EC 2.7.1.2) |
Glucokinase, ROK family (EC 2.7.1.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |