Regulog GlcC - Alcaligenaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glycolate utilization |
| Effector: | Glycolate |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alcaligenaceae
- By TF family - GntR/Others
- By effector - Glycolate
- By pathway - Glycolate utilization
| Genome | Genes | Operons |
|---|---|---|
| Bordetella avium 197N | ||
| Bordetella bronchiseptica RB50 | 2 | 2 |
| Bordetella petrii DSM 12804 | 5 | 3 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| glcC |
|
*
Bordetella bronchiseptica RB50 Site: position = -25 score = 5.25776 sequence = CGTGGTCATACCAGT Site: position = -134 score = 5.61441 sequence = ACTGGTCATACCAGT Gene: BB0096: Glycolate utilization operon transcriptional activator GlcC |
*
Bordetella petrii DSM 12804 Site: position = -133 score = 5.39204 sequence = CCTGGTCATACCAGT Site: position = -24 score = 5.13954 sequence = TCTGGTCATACCAGT Gene: Bpet4865: Glycolate utilization operon transcriptional activator GlcC |
Glycolate utilization operon transcriptional activator GlcC |
| CRON 2. | ||||
| glcB |
Gene: BAV0105: Malate synthase G (EC 2.3.3.9) |
*
Bordetella bronchiseptica RB50 Site: position = -233 score = 5.25776 sequence = ACTGGTATGACCACG Site: position = -124 score = 5.61441 sequence = ACTGGTATGACCAGT Gene: BB0095: Malate synthase G (EC 2.3.3.9) |
*
Bordetella petrii DSM 12804 Site: position = -219 score = 5.13954 sequence = ACTGGTATGACCAGA Site: position = -110 score = 5.39204 sequence = ACTGGTATGACCAGG Gene: Bpet4866: Malate synthase G (EC 2.3.3.9) |
Malate synthase G (EC 2.3.3.9) |
| CRON 3. | ||||
| glcD1 |
Gene: BAV2151: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Gene: BB1938: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
*
Bordetella petrii DSM 12804 Site: position = -97 score = 4.62806 sequence = GCTGGTAAGACCATG Gene: Bpet2736: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD |
| glcE |
Gene: BAV2150: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: BB1939: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Gene: Bpet2735: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE |
| glcF |
Gene: BAV2149: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: BB1940: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Gene: Bpet2734: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |