Regulog UreR - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 10 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1	6	1
Acidovorax sp. JS42
Comamonas testosteroni KF-1	3	2
Delftia acidovorans SPH-1	8	3
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
ureR	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -38 score = 5.27591 sequence = ACTGGTCTGACCTGT Gene: Aave_0212: Transcriptional regulator, GntR family	Acidovorax sp. JS42	Comamonas testosteroni KF-1	* Delftia acidovorans SPH-1 Site: position = -45 score = 5.1681 sequence = CGTGGTCTGACCAGT Gene: Daci_0231: Transcriptional regulator, GntR family	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Transcriptional regulator, GntR family
ureA	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_0211: Amino acid ABC transporter, periplasmic substrate-binding protein	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_0230: Amino acid ABC transporter, periplasmic substrate-binding protein	Leptothrix cholodnii SP-6 Gene: Lcho_3211: Amino acid ABC transporter, periplasmic substrate-binding protein	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_4065: Amino acid ABC transporter, periplasmic substrate-binding protein	Polaromonas sp. JS666 Gene: Bpro_1501: Amino acid ABC transporter, periplasmic substrate-binding protein	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0161: Amino acid ABC transporter, periplasmic substrate-binding protein	Variovorax paradoxus S110 Gene: Vapar_3667: Amino acid ABC transporter, periplasmic substrate-binding protein	Verminephrobacter eiseniae EF01-2	Amino acid ABC transporter, periplasmic substrate-binding protein
ureB	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_0210: Amino acid ABC transporter, permease protein	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_0229: Amino acid ABC transporter, permease protein	Leptothrix cholodnii SP-6 Gene: Lcho_3210: Amino acid ABC transporter, permease protein	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_4064: Amino acid ABC transporter, permease protein	2 Polaromonas sp. JS666 Gene: Bpro_3473: Amino acid ABC transporter, permease protein Gene: Bpro_1502: Amino acid ABC transporter, permease protein	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0162: Amino acid ABC transporter, permease protein	Variovorax paradoxus S110 Gene: Vapar_3668: Amino acid ABC transporter, permease protein	Verminephrobacter eiseniae EF01-2	Amino acid ABC transporter, permease protein
ureC	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_0209: Amino acid ABC transporter, permease protein	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_0228: Amino acid ABC transporter, permease protein	Leptothrix cholodnii SP-6 Gene: Lcho_3209: Amino acid ABC transporter, permease protein	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_4063: Amino acid ABC transporter, permease protein	2 Polaromonas sp. JS666 Gene: Bpro_3474: Amino acid ABC transporter, permease protein Gene: Bpro_1503: Amino acid ABC transporter, permease protein	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0163: Amino acid ABC transporter, permease protein	Variovorax paradoxus S110 Gene: Vapar_3669: Amino acid ABC transporter, permease protein	Verminephrobacter eiseniae EF01-2	Amino acid ABC transporter, permease protein
ureD	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_0208: Amino acid ABC transporter, ATP-binding protein	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_0227: Amino acid ABC transporter, ATP-binding protein	Leptothrix cholodnii SP-6 Gene: Lcho_3208: Amino acid ABC transporter, ATP-binding protein	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_4062: Amino acid ABC transporter, ATP-binding protein	2 Polaromonas sp. JS666 Gene: Bpro_1504: Amino acid ABC transporter, ATP-binding protein Gene: Bpro_3475: Amino acid ABC transporter, ATP-binding protein	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0164: Amino acid ABC transporter, ATP-binding protein	Variovorax paradoxus S110 Gene: Vapar_3670: Amino acid ABC transporter, ATP-binding protein	Verminephrobacter eiseniae EF01-2	Amino acid ABC transporter, ATP-binding protein
ureH	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_0207: Ureidoglycolate hydrolase (EC 3.5.3.19)	Acidovorax sp. JS42	* Comamonas testosteroni KF-1 Site: position = -163 score = 5.32508 sequence = ACTGGTATTACCGGT Site: position = -41 score = 5.55666 sequence = ACTGGTATTACCAGT Gene: CtesDRAFT_0602: Ureidoglycolate hydrolase (EC 3.5.3.19)	* Delftia acidovorans SPH-1 Site: position = -194 score = 5.49969 sequence = ACTGGTATGACCGGT Site: position = -47 score = 5.55666 sequence = ACTGGTAATACCAGT Gene: Daci_5077: Ureidoglycolate hydrolase (EC 3.5.3.19)	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_0386: Ureidoglycolate hydrolase (EC 3.5.3.19)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0846: Ureidoglycolate hydrolase (EC 3.5.3.19)	Verminephrobacter eiseniae EF01-2	Ureidoglycolate hydrolase (EC 3.5.3.19)

CRON 2.
ureT	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	* Comamonas testosteroni KF-1 Site: position = -167 score = 5.55666 sequence = ACTGGTAATACCAGT Site: position = -45 score = 5.32508 sequence = ACCGGTAATACCAGT Gene: CtesDRAFT_0603: major facilitator superfamily transporter	* Delftia acidovorans SPH-1 Site: position = -94 score = 5.55666 sequence = ACTGGTATTACCAGT Site: position = 53 score = 5.49969 sequence = ACCGGTCATACCAGT Gene: Daci_5076: major facilitator superfamily transporter	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	major facilitator superfamily transporter
ureR2	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0604: Transcriptional regulator, GntR family	Delftia acidovorans SPH-1 Gene: Daci_5075: Transcriptional regulator, GntR family	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Transcriptional regulator, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog UreR - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --