Regulog UreR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/Others
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | 6 | 1 |
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | 3 | 2 |
| Delftia acidovorans SPH-1 | 8 | 3 |
| Leptothrix cholodnii SP-6 | ||
| Methylibium petroleiphilum PM1 | ||
| Polaromonas naphthalenivorans CJ2 | ||
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | ||
| Verminephrobacter eiseniae EF01-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| ureR |
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Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -38 score = 5.27591 sequence = ACTGGTCTGACCTGT Gene: Aave_0212: Transcriptional regulator, GntR family |
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Delftia acidovorans SPH-1 Site: position = -45 score = 5.1681 sequence = CGTGGTCTGACCAGT Gene: Daci_0231: Transcriptional regulator, GntR family |
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Transcriptional regulator, GntR family |
| ureA |
Gene: Aave_0211: Amino acid ABC transporter, periplasmic substrate-binding protein |
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Gene: Daci_0230: Amino acid ABC transporter, periplasmic substrate-binding protein |
Gene: Lcho_3211: Amino acid ABC transporter, periplasmic substrate-binding protein |
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Gene: Pnap_4065: Amino acid ABC transporter, periplasmic substrate-binding protein |
Gene: Bpro_1501: Amino acid ABC transporter, periplasmic substrate-binding protein |
Gene: Rfer_0161: Amino acid ABC transporter, periplasmic substrate-binding protein |
Gene: Vapar_3667: Amino acid ABC transporter, periplasmic substrate-binding protein |
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Amino acid ABC transporter, periplasmic substrate-binding protein |
| ureB |
Gene: Aave_0210: Amino acid ABC transporter, permease protein |
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Gene: Daci_0229: Amino acid ABC transporter, permease protein |
Gene: Lcho_3210: Amino acid ABC transporter, permease protein |
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Gene: Pnap_4064: Amino acid ABC transporter, permease protein |
2
Polaromonas sp. JS666 Gene: Bpro_3473: Amino acid ABC transporter, permease protein Gene: Bpro_1502: Amino acid ABC transporter, permease protein |
Gene: Rfer_0162: Amino acid ABC transporter, permease protein |
Gene: Vapar_3668: Amino acid ABC transporter, permease protein |
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Amino acid ABC transporter, permease protein |
| ureC |
Gene: Aave_0209: Amino acid ABC transporter, permease protein |
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Gene: Daci_0228: Amino acid ABC transporter, permease protein |
Gene: Lcho_3209: Amino acid ABC transporter, permease protein |
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Gene: Pnap_4063: Amino acid ABC transporter, permease protein |
2
Polaromonas sp. JS666 Gene: Bpro_3474: Amino acid ABC transporter, permease protein Gene: Bpro_1503: Amino acid ABC transporter, permease protein |
Gene: Rfer_0163: Amino acid ABC transporter, permease protein |
Gene: Vapar_3669: Amino acid ABC transporter, permease protein |
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Amino acid ABC transporter, permease protein |
| ureD |
Gene: Aave_0208: Amino acid ABC transporter, ATP-binding protein |
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Gene: Daci_0227: Amino acid ABC transporter, ATP-binding protein |
Gene: Lcho_3208: Amino acid ABC transporter, ATP-binding protein |
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Gene: Pnap_4062: Amino acid ABC transporter, ATP-binding protein |
2
Polaromonas sp. JS666 Gene: Bpro_1504: Amino acid ABC transporter, ATP-binding protein Gene: Bpro_3475: Amino acid ABC transporter, ATP-binding protein |
Gene: Rfer_0164: Amino acid ABC transporter, ATP-binding protein |
Gene: Vapar_3670: Amino acid ABC transporter, ATP-binding protein |
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Amino acid ABC transporter, ATP-binding protein |
| ureH |
Gene: Aave_0207: Ureidoglycolate hydrolase (EC 3.5.3.19) |
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Comamonas testosteroni KF-1 Site: position = -163 score = 5.32508 sequence = ACTGGTATTACCGGT Site: position = -41 score = 5.55666 sequence = ACTGGTATTACCAGT Gene: CtesDRAFT_0602: Ureidoglycolate hydrolase (EC 3.5.3.19) |
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Delftia acidovorans SPH-1 Site: position = -194 score = 5.49969 sequence = ACTGGTATGACCGGT Site: position = -47 score = 5.55666 sequence = ACTGGTAATACCAGT Gene: Daci_5077: Ureidoglycolate hydrolase (EC 3.5.3.19) |
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Gene: Bpro_0386: Ureidoglycolate hydrolase (EC 3.5.3.19) |
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Gene: Vapar_0846: Ureidoglycolate hydrolase (EC 3.5.3.19) |
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Ureidoglycolate hydrolase (EC 3.5.3.19) |
| CRON 2. | ||||||||||||
| ureT |
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Comamonas testosteroni KF-1 Site: position = -167 score = 5.55666 sequence = ACTGGTAATACCAGT Site: position = -45 score = 5.32508 sequence = ACCGGTAATACCAGT Gene: CtesDRAFT_0603: major facilitator superfamily transporter |
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Delftia acidovorans SPH-1 Site: position = -94 score = 5.55666 sequence = ACTGGTATTACCAGT Site: position = 53 score = 5.49969 sequence = ACCGGTCATACCAGT Gene: Daci_5076: major facilitator superfamily transporter |
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major facilitator superfamily transporter |
| ureR2 |
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Gene: CtesDRAFT_0604: Transcriptional regulator, GntR family |
Gene: Daci_5075: Transcriptional regulator, GntR family |
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Transcriptional regulator, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |