Regulog IolR - Micrococcineae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Inositol utilization |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Micrococcineae
- By TF family - GntR/Others
- By pathway - Inositol utilization
| Genome | Genes | Operons |
|---|---|---|
| Arthrobacter aurescens TC1 | 19 | 7 |
| Arthrobacter chlorophenolicus A6 | 19 | 6 |
| Arthrobacter sp. FB24 | 17 | 5 |
| Beutenbergia cavernae DSM 12333 | 14 | 4 |
| Brachybacterium faecium DSM 4810 | ||
| Brevibacterium linens BL2 | ||
| Clavibacter michiganensis subsp. michiganensis NCPPB 382 | 11 | 4 |
| Janibacter sp. HTCC2649 | 5 | 2 |
| Jonesia denitrificans DSM 20603 | ||
| Kocuria rhizophila DC2201 | ||
| Kytococcus sedentarius DSM 20547 | ||
| Leifsonia xyli subsp. xyli str. CTCB07 | 2 | 2 |
| Renibacterium salmoninarum ATCC 33209 | 15 | 4 |
| Tropheryma whipplei str. Twist |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| yodA |
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Arthrobacter aurescens TC1 Site: position = -31 score = 5.11833 sequence = AGTATGACAGGACAAACT Gene: AAur_1976: Putative 4-Oxalocrotonate tautomerase |
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Arthrobacter chlorophenolicus A6 Site: position = -35 score = 5.25521 sequence = AGTATGTCAGTACAAACT Gene: Achl_0936: Putative 4-Oxalocrotonate tautomerase |
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Arthrobacter sp. FB24 Site: position = -33 score = 4.7458 sequence = AGCAGGTCAGGACAAACT Gene: Arth_0819: Putative 4-Oxalocrotonate tautomerase |
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Gene: CMM_0170: Putative 4-Oxalocrotonate tautomerase |
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Putative 4-Oxalocrotonate tautomerase |
| CRON 2. | |||||||||||||||
| iolC |
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Arthrobacter aurescens TC1 Site: position = -74 score = 4.77007 sequence = AATATGTCAGTACAAACC Site: position = -58 score = 4.38712 sequence = CCTTTGACAGGACATTAA Gene: AAur_1977: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
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Arthrobacter chlorophenolicus A6 Site: position = -140 score = 5.01263 sequence = AGTATGTCAGTACAAACC Site: position = -124 score = 4.72896 sequence = CCTTTGACAGGACATTCG Gene: Achl_0937: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
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Arthrobacter sp. FB24 Site: position = -49 score = 4.77007 sequence = AATATGTCAGTACAAACC Site: position = -33 score = 4.44086 sequence = CCTTTGACAGGACAATAA Gene: Arth_0820: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
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Beutenbergia cavernae DSM 12333 Site: position = -42 score = 4.63322 sequence = CATTTGTCCGAACATTTG Site: position = -176 score = 4.6597 sequence = GAAATGTCCGGACATGCG Gene: Bcav_0725: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
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Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -83 score = 4.79672 sequence = CCTATGTCAGAACATGCG Gene: CMM_0774: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
Gene: JNB_13798: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
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*3
Renibacterium salmoninarum ATCC 33209 Site: position = -19 score = 5.04293 sequence = AATATGTCCTGACAAAGC Site: position = -3 score = 4.40534 sequence = GCTTTGACAGGACATAAC Gene: RSal33209_0357: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) Gene: RSal33209_0358: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) Gene: RSal33209_0359: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
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5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
| iolJ |
Gene: AAur_1978: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
Gene: Achl_0938: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
Gene: Arth_0821: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
Gene: Bcav_0726: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
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Gene: CMM_0775: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
Gene: JNB_13803: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
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Gene: Lxx24410: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
Gene: RSal33209_0360: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
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5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
| iolD |
Gene: AAur_1979: Epi-inositol hydrolase (EC 3.7.1.-) |
Gene: Achl_0939: Epi-inositol hydrolase (EC 3.7.1.-) |
Gene: Arth_0822: Epi-inositol hydrolase (EC 3.7.1.-) |
Gene: Bcav_0728: Epi-inositol hydrolase (EC 3.7.1.-) |
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Gene: CMM_0778: Epi-inositol hydrolase (EC 3.7.1.-) |
Gene: JNB_13813: Epi-inositol hydrolase (EC 3.7.1.-) |
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2
Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_0361: Epi-inositol hydrolase (EC 3.7.1.-) Gene: RSal33209_0362: Epi-inositol hydrolase (EC 3.7.1.-) |
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Epi-inositol hydrolase (EC 3.7.1.-) |
| iolE |
2
Arthrobacter aurescens TC1 Gene: AAur_1981: Inosose dehydratase (EC 4.2.1.44) Gene: AAur_1985: Inosose dehydratase (EC 4.2.1.44) |
2
Arthrobacter chlorophenolicus A6 Gene: Achl_0119: Inosose dehydratase (EC 4.2.1.44) Gene: Achl_0941: Inosose dehydratase (EC 4.2.1.44) |
Gene: Arth_0824: Inosose dehydratase (EC 4.2.1.44) |
Gene: Bcav_0730: Inosose dehydratase (EC 4.2.1.44) |
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Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -130 score = 4.38264 sequence = CTATCGTCAGGACAAACA Gene: CMM_0794: Inosose dehydratase (EC 4.2.1.44) |
Gene: JNB_13793: Inosose dehydratase (EC 4.2.1.44) |
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Gene: Lxx24330: Inosose dehydratase (EC 4.2.1.44) |
2
Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_0363: Inosose dehydratase (EC 4.2.1.44) Gene: RSal33209_0364: Inosose dehydratase (EC 4.2.1.44) |
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Inosose dehydratase (EC 4.2.1.44) |
| iolG |
Gene: AAur_1982: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
2
Arthrobacter chlorophenolicus A6 Gene: Achl_0942: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) Gene: Achl_0120: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
Gene: Arth_0825: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
Gene: Bcav_0731: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
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Gene: CMM_0793: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
*2
Janibacter sp. HTCC2649 Gene: JNB_13818: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) Site: position = -55 score = 4.87496 sequence = CATATGTCCTAACAAAGG Gene: JNB_13788: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
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Gene: Lxx24320: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
Gene: RSal33209_0365: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
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Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
| iolA |
2
Arthrobacter aurescens TC1 Gene: AAur_1980: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Gene: AAur_1941: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Achl_0940: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Arth_0823: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Bcav_0729: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
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Gene: CMM_0776: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: JNB_13823: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
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Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
| iolH |
Gene: AAur_1983: myo-inositol catabolism sugar-phosphate epimerase |
Gene: Achl_0943: myo-inositol catabolism sugar-phosphate epimerase |
Gene: Arth_0826: myo-inositol catabolism sugar-phosphate epimerase |
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myo-inositol catabolism sugar-phosphate epimerase |
| iolT |
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Arthrobacter aurescens TC1 Site: position = -89 score = 4.06029 sequence = AGTTTGACCTTACATTTA Gene: AAur_1368: Myo-inositol transporter, MFS family |
2
Arthrobacter chlorophenolicus A6 Gene: Achl_0118: Myo-inositol transporter, MFS family Gene: Achl_0944: Myo-inositol transporter, MFS family |
Gene: Arth_0827: Myo-inositol transporter, MFS family |
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Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -34 score = 4.71931 sequence = CTAATGTCGGGACATAGT Gene: Lxx16650: Myo-inositol transporter, MFS family |
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Myo-inositol transporter, MFS family |
| iolB |
Gene: AAur_1995: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
Gene: Achl_0957: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
Gene: Arth_0835: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
Gene: Bcav_0727: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
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Gene: CMM_0777: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
Gene: JNB_13808: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
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Gene: RSal33209_0366: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
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5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
| iolY |
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Arthrobacter aurescens TC1 Site: position = -3 score = 4.3724 sequence = TGATTGACAGGACATATG Gene: AAur_1986: inositol 2-dehydrogenase |
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Arthrobacter chlorophenolicus A6 Site: position = -122 score = 4.66661 sequence = GGATTGACAGGACAAAGT Gene: Achl_0117: inositol 2-dehydrogenase |
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inositol 2-dehydrogenase |
| iolX |
Gene: AAur_1984: Myo-inositol 2-dehydrogenase |
Gene: Achl_0112: Myo-inositol 2-dehydrogenase |
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Arthrobacter sp. FB24 Site: position = -66 score = 4.59411 sequence = TGTTTGTTCTAACATAAG Gene: Arth_1058: Myo-inositol 2-dehydrogenase |
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Myo-inositol 2-dehydrogenase |
| iolR |
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Arthrobacter aurescens TC1 Site: position = -64 score = 4.27612 sequence = ACTATGTCCTATCAAGAG Gene: AAur_1996: Inositol utilization transcriptional regulator, GntR family |
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Arthrobacter chlorophenolicus A6 Site: position = -185 score = 4.59455 sequence = CTAATGTCAGAACAATTT Site: position = -90 score = 4.37862 sequence = AGTATGTCCTATCAAGAG Gene: Achl_0958: Inositol utilization transcriptional regulator, GntR family |
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Arthrobacter sp. FB24 Site: position = -84 score = 4.37862 sequence = AGTATGTCCTATCAAGAG Gene: Arth_0836: Inositol utilization transcriptional regulator, GntR family |
*2
Beutenbergia cavernae DSM 12333 Site: position = -38 score = 3.5153 sequence = ACATTGAGTTGACATGTT Gene: Bcav_4190: Inositol utilization transcriptional regulator, GntR family Site: position = -250 score = 4.63322 sequence = CAAATGTTCGGACAAATG Site: position = -116 score = 4.6597 sequence = CGCATGTCCGGACATTTC Gene: Bcav_0724: Inositol utilization transcriptional regulator, GntR family |
Gene: Bfae_00770: Inositol utilization transcriptional regulator, GntR family |
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Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -32 score = 3.74726 sequence = GCGTTGACCTGACCTACG Gene: CMM_0789: Inositol utilization transcriptional regulator, GntR family |
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Janibacter sp. HTCC2649 Site: position = -52 score = 4.87496 sequence = CCTTTGTTAGGACATATG Gene: JNB_13783: Inositol utilization transcriptional regulator, GntR family |
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Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -40 score = 4.77545 sequence = TGGTTGTTCTGACAAACT Gene: Lxx24260: Inositol utilization transcriptional regulator, GntR family |
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Renibacterium salmoninarum ATCC 33209 Site: position = -67 score = 4.96576 sequence = ACCTTGTCCTGACAATAG Gene: RSal33209_0367: Inositol utilization transcriptional regulator, GntR family |
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Inositol utilization transcriptional regulator, GntR family |
| CRON 3. | |||||||||||||||
| Bcav_2551 |
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Beutenbergia cavernae DSM 12333 Site: position = -34 score = 4.66726 sequence = CCTTTGTCGTAACAAAGT Gene: Bcav_2551: sugar ABC transporter periplasmic protein |
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sugar ABC transporter periplasmic protein |
| Bcav_2552 |
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Gene: Bcav_2552: sugar ABC transporter permease |
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sugar ABC transporter permease |
| Bcav_2553 |
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Gene: Bcav_2553: sugar ABC transporter permease |
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sugar ABC transporter permease |
| Bcav_2554 |
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Gene: Bcav_2554: sugar ABC transporter, ATP-binding protein |
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sugar ABC transporter, ATP-binding protein |
| Bcav_2555 |
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Gene: Bcav_2555: PHP domain-containing protein/metal-dependent phosphoesterase |
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PHP domain-containing protein/metal-dependent phosphoesterase |
| CRON 4. | |||||||||||||||
| iolR2 |
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Arthrobacter aurescens TC1 Site: position = -42 score = 4.3724 sequence = CATATGTCCTGTCAATCA Gene: AAur_1987: Transcriptional regulator for inositol utilization, LacI family |
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Arthrobacter chlorophenolicus A6 Site: position = -32 score = 4.66661 sequence = ACTTTGTCCTGTCAATCC Gene: Achl_0116: Transcriptional regulator for inositol utilization, LacI family |
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Transcriptional regulator for inositol utilization, LacI family |
| CRON 5. | |||||||||||||||
| iolTA |
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Arthrobacter aurescens TC1 Site: position = 27 score = 5.28157 sequence = CTAATGTCAGGACAAACT Gene: AAur_1988: Inositol ABC transport system sugar-binding protein |
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Arthrobacter chlorophenolicus A6 Site: position = -137 score = 4.82309 sequence = CTATTGACAGGACAAACT Gene: Achl_0113: Inositol ABC transport system sugar-binding protein |
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Arthrobacter sp. FB24 Site: position = -165 score = 5.28157 sequence = CTAATGTCAGGACAAACT Gene: Arth_0830: Inositol ABC transport system sugar-binding protein |
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Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -97 score = 4.25325 sequence = AGCATGTGTTGACAAACA Gene: CMM_0792: Inositol ABC transport system sugar-binding protein |
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Renibacterium salmoninarum ATCC 33209 Site: position = -186 score = 5.41642 sequence = AGTATGTCAGGACATTCT Gene: RSal33209_3164: Inositol ABC transport system sugar-binding protein |
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Inositol ABC transport system sugar-binding protein |
| iolTB |
Gene: AAur_1989: Inositol ABC transport system permease protein |
Gene: Achl_0114: Inositol ABC transport system permease protein |
Gene: Arth_0831: Inositol ABC transport system permease protein |
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Gene: CMM_0791: Inositol ABC transport system permease protein |
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Gene: RSal33209_3163: Inositol ABC transport system permease protein |
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Inositol ABC transport system permease protein |
| iolTC |
Gene: AAur_1990: Inositol ABC transport system ATP-binding protein |
Gene: Achl_0115: Inositol ABC transport system ATP-binding protein |
Gene: Arth_0832: Inositol ABC transport system ATP-binding protein |
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Gene: CMM_0790: Inositol ABC transport system ATP-binding protein |
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Gene: RSal33209_3162: Inositol ABC transport system ATP-binding protein |
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Inositol ABC transport system ATP-binding protein |
| oxiB |
Gene: AAur_1991: putative myo-inositol 2-dehydrogenase |
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putative myo-inositol 2-dehydrogenase |
| oxiC |
Gene: AAur_1992: putative myo-inositol 2-dehydrogenase |
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Gene: Bfae_26160: putative myo-inositol 2-dehydrogenase |
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Gene: JNB_03620: putative myo-inositol 2-dehydrogenase |
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putative myo-inositol 2-dehydrogenase |
| oxiD |
Gene: AAur_1993: putative myo-inositol 2-dehydrogenase |
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Gene: Arth_0833: putative myo-inositol 2-dehydrogenase |
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putative myo-inositol 2-dehydrogenase |
| oxiA |
Gene: AAur_1994: putative myo-inositol 2-dehydrogenase |
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Gene: Arth_0834: putative myo-inositol 2-dehydrogenase |
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Renibacterium salmoninarum ATCC 33209 Site: position = -53 score = 5.41642 sequence = AGAATGTCCTGACATACT Gene: RSal33209_3165: putative myo-inositol 2-dehydrogenase |
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putative myo-inositol 2-dehydrogenase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |