Regulog BAV2585 - Alcaligenaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Nitrogen metabolism |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alcaligenaceae
- By TF family - GntR/Others
- By pathway - Nitrogen metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bordetella avium 197N | 7 | 2 |
| Bordetella bronchiseptica RB50 | ||
| Bordetella petrii DSM 12804 | 9 | 3 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| urtA |
|
|
*
Bordetella petrii DSM 12804 Site: position = -442 score = 5.22932 sequence = GCTTGTATACAAGT Gene: Bpet0295: Urea ABC transporter, urea binding protein UrtA |
Urea ABC transporter, urea binding protein UrtA |
| urtB |
|
|
Gene: Bpet0296: Urea ABC transporter, permease protein UrtB |
Urea ABC transporter, permease protein UrtB |
| urtC |
|
|
Gene: Bpet0297: Urea ABC transporter permease UrtC |
Urea ABC transporter permease UrtC |
| urtD |
|
|
Gene: Bpet0298: Urea ABC transporter ATP-binding protein UrtD |
Urea ABC transporter ATP-binding protein UrtD |
| urtE |
|
|
Gene: Bpet0299: Urea ABC transporter ATP-binding protein UrtE |
Urea ABC transporter ATP-binding protein UrtE |
| CRON 2. | ||||
| BAV0996 |
Gene: BAV0996: Amidase |
|
*
Bordetella petrii DSM 12804 Site: position = -153 score = 4.698 sequence = GCTGGTGTACAAGT Gene: Bpet0288: Amidase |
Amidase |
| CRON 3. | ||||
| BAV2580 |
*
Bordetella avium 197N Site: position = -49 score = 4.07818 sequence = ATCGGTATACAAGC Gene: BAV2580: ABC transporter substrate binding protein, periplasmic component |
|
|
ABC transporter substrate binding protein, periplasmic component |
| BAV2581 |
Gene: BAV2581: ABC transporter, permease protein |
|
|
ABC transporter, permease protein |
| BAV2582 |
Gene: BAV2582: ABC transporter ATP-binding protein |
|
|
ABC transporter ATP-binding protein |
| BAV2583 |
Gene: BAV2583: hypothetical protein |
|
|
hypothetical protein |
| gatA |
Gene: BAV2584: amidase AtzE family |
|
|
amidase AtzE family |
| BAV2585 |
Gene: BAV2585: Transcriptional regulator, GntR-family |
|
Gene: Bpet0292: Transcriptional regulator, GntR-family |
Transcriptional regulator, GntR-family |
| ucaB |
*
Bordetella avium 197N Site: position = -26 score = 4.05367 sequence = ACATGTATACCACT Gene: BAV0804: Allophanate hydrolase (EC 3.5.1.54) |
|
*
Bordetella petrii DSM 12804 Site: position = -27 score = 5.22932 sequence = ACTTGTATACAAGC Gene: Bpet0294: Allophanate hydrolase (EC 3.5.1.54) |
Allophanate hydrolase (EC 3.5.1.54) |
| ucaA |
|
|
Gene: Bpet0293: Urea carboxylase (EC 6.3.4.6) |
Urea carboxylase (EC 6.3.4.6) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |