Regulog SdaR - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Glucarate utilization; Galactarate utilization
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 1 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236	2	1
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
sdaR	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	* Rhodoferax ferrireducens DSM 15236 Site: position = -38 score = 4.74989 sequence = AATTTGTCATGCAGCCT Gene: Rfer_1641: Predicted regulator of D-glucarate/D-galactarate utilization, GntR family	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Predicted regulator of D-glucarate/D-galactarate utilization, GntR family
COG579	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2451: 2-hydroxyglutarate dehydrogenase	Acidovorax sp. JS42 Gene: Ajs_2136: 2-hydroxyglutarate dehydrogenase	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_3992: 2-hydroxyglutarate dehydrogenase	Leptothrix cholodnii SP-6 Gene: Lcho_1916: 2-hydroxyglutarate dehydrogenase	Methylibium petroleiphilum PM1 Gene: Mpe_A1030: 2-hydroxyglutarate dehydrogenase	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_2706: 2-hydroxyglutarate dehydrogenase	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1640: 2-hydroxyglutarate dehydrogenase	Variovorax paradoxus S110 Gene: Vapar_2152: 2-hydroxyglutarate dehydrogenase	Verminephrobacter eiseniae EF01-2	2-hydroxyglutarate dehydrogenase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --