Regulog TreR - Listeriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Trehalose utilization
Effector:	Trehalose-6-phosphate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Listeria innocua Clip11262	2	1
Listeria monocytogenes EGD-e	2	1
Listeria seeligeri serovar 1/2b str. SLCC3954	1	1
Listeria welshimeri serovar 6b str. SLCC5334	2	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes					Function

CRON 1.
treP	* Listeria innocua Clip11262 Site: position = -35 score = 6.59326 sequence = AACTTGTATATACAAGTT Gene: lin1223: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)	* Listeria monocytogenes EGD-e Site: position = -35 score = 6.59326 sequence = AACTTGTATATACAAGTT Gene: lmo1255: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)	* Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -36 score = 6.59326 sequence = AACTTGTATATACAAGTT Gene: lse_1171: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)	* Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -36 score = 6.59326 sequence = AACTTGTATATACAAGTT Gene: lwe1274: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)	Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
treA	Listeria innocua Clip11262 Gene: lin1222: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Listeria monocytogenes EGD-e Gene: lmo1254: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Listeria seeligeri serovar 1/2b str. SLCC3954	Listeria welshimeri serovar 6b str. SLCC5334 Gene: lwe1273: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)	Trehalose-6-phosphate hydrolase (EC 3.2.1.93)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --