Regulog GmuR - Listeriaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucomannan utilization |
| Effector: | |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Listeriaceae
- By TF family - GntR/Others
- By pathway - Glucomannan utilization
| Genome | Genes | Operons |
|---|---|---|
| Listeria innocua Clip11262 | 5 | 4 |
| Listeria monocytogenes EGD-e | 5 | 4 |
| Listeria seeligeri serovar 1/2b str. SLCC3954 | 5 | 4 |
| Listeria welshimeri serovar 6b str. SLCC5334 | 5 | 4 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| manA |
*
Listeria innocua Clip11262 Site: position = -62 score = 4.76773 sequence = ATTAGTATATACTTTT Gene: lin2215: Mannose-6-phosphate isomerase (EC 5.3.1.8) |
*
Listeria monocytogenes EGD-e Site: position = -62 score = 4.76773 sequence = ATTAGTATATACTTTT Gene: lmo2110: Mannose-6-phosphate isomerase (EC 5.3.1.8) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -63 score = 4.76773 sequence = ATTAGTATATACTTTT Gene: lse_2099: Mannose-6-phosphate isomerase (EC 5.3.1.8) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -62 score = 4.76773 sequence = ATTAGTATATACTTTT Gene: lwe2129: Mannose-6-phosphate isomerase (EC 5.3.1.8) |
Mannose-6-phosphate isomerase (EC 5.3.1.8) |
| CRON 2. | |||||
| gmuD |
*
Listeria innocua Clip11262 Site: position = -63 score = 4.77397 sequence = ATAAGTTTATACTTTT Gene: lin0583: Mannoside-phospho-beta-d-glucosidase |
*
Listeria monocytogenes EGD-e Site: position = -63 score = 4.77397 sequence = ATAAGTTTATACTTTT Gene: lmo0574: Mannoside-phospho-beta-d-glucosidase |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -65 score = 4.77397 sequence = ATAAGTTTATACTTTT Gene: lse_0482: Mannoside-phospho-beta-d-glucosidase |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -63 score = 4.77397 sequence = ATAAGTTTATACTTTT Gene: lwe0540: Mannoside-phospho-beta-d-glucosidase |
Mannoside-phospho-beta-d-glucosidase |
| gmuR2 |
Gene: lin0584: Transcriptional regulator for glucomannan utilization, GntR family |
Gene: lmo0575: Transcriptional regulator for glucomannan utilization, GntR family |
Gene: lse_0483: Transcriptional regulator for glucomannan utilization, GntR family |
Gene: lwe0541: Transcriptional regulator for glucomannan utilization, GntR family |
Transcriptional regulator for glucomannan utilization, GntR family |
| CRON 3. | |||||
| gmuC |
*
Listeria innocua Clip11262 Site: position = -87 score = 5.84316 sequence = AAAAGACTAGACATTT Gene: lin0900: Glucomannan-related PTS system, IIC component (EC 2.7.1.69) |
*
Listeria monocytogenes EGD-e Site: position = -89 score = 5.84316 sequence = AAAAGACTAGACATTT Gene: lmo0901: Glucomannan-related PTS system, IIC component (EC 2.7.1.69) |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -88 score = 5.84316 sequence = AAAAGACTAGACATTT Gene: lse_0803: Glucomannan-related PTS system, IIC component (EC 2.7.1.69) |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -87 score = 5.84316 sequence = AAAAGACTAGACATTT Gene: lwe0886: Glucomannan-related PTS system, IIC component (EC 2.7.1.69) |
Glucomannan-related PTS system, IIC component (EC 2.7.1.69) |
| CRON 4. | |||||
| gmuR1 |
*
Listeria innocua Clip11262 Site: position = -42 score = 5.59127 sequence = AAATGGCTAGACATTT Gene: lin0901: Transcriptional regulator for glucomannan utilization, GntR family |
*
Listeria monocytogenes EGD-e Site: position = -42 score = 5.59127 sequence = AAATGGCTAGACATTT Gene: lmo0902: Transcriptional regulator for glucomannan utilization, GntR family |
*
Listeria seeligeri serovar 1/2b str. SLCC3954 Site: position = -42 score = 5.59127 sequence = AAATGGCTAGACATTT Gene: lse_0804: Transcriptional regulator for glucomannan utilization, GntR family |
*
Listeria welshimeri serovar 6b str. SLCC5334 Site: position = -42 score = 5.59127 sequence = AAATGGCTAGACATTT Gene: lwe0887: Transcriptional regulator for glucomannan utilization, GntR family |
Transcriptional regulator for glucomannan utilization, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |