Regulog LldR - Micrococcineae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Lactate utilization |
| Effector: | L-lactate |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Micrococcineae
- By TF family - GntR/Others
- By effector - L-lactate
- By pathway - Lactate utilization
| Genome | Genes | Operons |
|---|---|---|
| Arthrobacter aurescens TC1 | 2 | 2 |
| Arthrobacter chlorophenolicus A6 | ||
| Arthrobacter sp. FB24 | 2 | 2 |
| Beutenbergia cavernae DSM 12333 | ||
| Brachybacterium faecium DSM 4810 | 2 | 2 |
| Brevibacterium linens BL2 | 7 | 4 |
| Clavibacter michiganensis subsp. michiganensis NCPPB 382 | ||
| Janibacter sp. HTCC2649 | ||
| Jonesia denitrificans DSM 20603 | 1 | 1 |
| Kocuria rhizophila DC2201 | 5 | 2 |
| Kytococcus sedentarius DSM 20547 | ||
| Leifsonia xyli subsp. xyli str. CTCB07 | ||
| Renibacterium salmoninarum ATCC 33209 | 2 | 2 |
| Tropheryma whipplei str. Twist |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| lldP2 |
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Kocuria rhizophila DC2201 Site: position = -273 score = 4.28692 sequence = TGTGGCCAGACCAGG Site: position = -132 score = 5.60343 sequence = TGTGGTCGGACCACT Site: position = -118 score = 5.79586 sequence = TGTGGTCTGACCACT Gene: KRH_04350: L-lactate permease |
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L-lactate permease |
| lldR |
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Arthrobacter aurescens TC1 Site: position = -57 score = 5.96271 sequence = TGTGGTCTAACCACA Site: position = -32 score = 5.77028 sequence = TGTGGTTGGACCACA Gene: AAur_3323: Lactate-responsive regulator LldR in Actinobacteria, GntR family |
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Arthrobacter sp. FB24 Site: position = -24 score = 5.96271 sequence = TGTGGTCTAACCACA Site: position = 1 score = 5.77028 sequence = TGTGGTCCAACCACA Gene: Arth_3342: Lactate-responsive regulator LldR in Actinobacteria, GntR family |
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Brachybacterium faecium DSM 4810 Site: position = -147 score = 6.19742 sequence = TGTGGTCAGACCACA Gene: Bfae_12010: Lactate-responsive regulator LldR in Actinobacteria, GntR family |
*2
Brevibacterium linens BL2 Gene: BlinB01002688: Lactate-responsive regulator LldR in Actinobacteria, GntR family Site: position = -119 score = 4.91688 sequence = TGTGGTCAGACCTTA Gene: BlinB01001218: Lactate-responsive regulator LldR in Actinobacteria, GntR family |
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Jonesia denitrificans DSM 20603 Site: position = -52 score = 5.55324 sequence = TGTGGCCTGACCACA Gene: Jden_0453: Lactate-responsive regulator LldR in Actinobacteria, GntR family |
2
Kocuria rhizophila DC2201 Gene: KRH_04840: Lactate-responsive regulator LldR in Actinobacteria, GntR family Gene: KRH_04340: Lactate-responsive regulator LldR in Actinobacteria, GntR family |
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Renibacterium salmoninarum ATCC 33209 Site: position = -36 score = 5.1409 sequence = TGTGGTTGGACCATA Site: position = 1 score = 5.55348 sequence = TGTGGTCCTACCACA Gene: RSal33209_2721: Lactate-responsive regulator LldR in Actinobacteria, GntR family |
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Lactate-responsive regulator LldR in Actinobacteria, GntR family |
| CRON 2. | |||||||||||||||
| lldP |
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Brevibacterium linens BL2 Site: position = -42 score = 5.79586 sequence = AGTGGTCTGACCACA Gene: BlinB01001150: L-lactate permease |
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L-lactate permease |
| lldD |
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Arthrobacter aurescens TC1 Site: position = -136 score = 5.77028 sequence = TGTGGTCCAACCACA Site: position = -111 score = 5.96271 sequence = TGTGGTTAGACCACA Gene: AAur_3324: L-lactate dehydrogenase (EC 1.1.2.3) |
Gene: Achl_3141: L-lactate dehydrogenase (EC 1.1.2.3) |
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Arthrobacter sp. FB24 Site: position = -101 score = 5.77028 sequence = TGTGGTTGGACCACA Site: position = -76 score = 5.96271 sequence = TGTGGTTAGACCACA Gene: Arth_3343: L-lactate dehydrogenase (EC 1.1.2.3) |
Gene: Bcav_3293: L-lactate dehydrogenase (EC 1.1.2.3) |
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Brachybacterium faecium DSM 4810 Site: position = -63 score = 6.19742 sequence = TGTGGTCTGACCACA Gene: Bfae_12000: L-lactate dehydrogenase (EC 1.1.2.3) |
*2
Brevibacterium linens BL2 Gene: BlinB01001149: L-lactate dehydrogenase (EC 1.1.2.3) Site: position = 27 score = 4.08837 sequence = TTCGGTCTGCCCAGA Gene: BlinB01002179: L-lactate dehydrogenase (EC 1.1.2.3) |
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Gene: KRH_12300: L-lactate dehydrogenase (EC 1.1.2.3) |
Gene: Ksed_03020: L-lactate dehydrogenase (EC 1.1.2.3) |
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Renibacterium salmoninarum ATCC 33209 Site: position = -24 score = 5.55348 sequence = TGTGGTAGGACCACA Site: position = 13 score = 5.1409 sequence = TATGGTCCAACCACA Gene: RSal33209_2722: L-lactate dehydrogenase (EC 1.1.2.3) |
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L-lactate dehydrogenase (EC 1.1.2.3) |
| CRON 3. | |||||||||||||||
| lldE |
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Gene: Achl_3104: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
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Gene: Bfae_12950: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
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Brevibacterium linens BL2 Site: position = -118 score = 4.91688 sequence = TAAGGTCTGACCACA Gene: BlinB01001219: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
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Gene: JNB_14078: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
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Kocuria rhizophila DC2201 Site: position = -223 score = 5.79586 sequence = AGTGGTCAGACCACA Site: position = -209 score = 5.60343 sequence = AGTGGTCCGACCACA Site: position = -68 score = 4.28692 sequence = CCTGGTCTGGCCACA Gene: KRH_04360: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
Gene: Ksed_04070: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
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L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
| lldF |
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Gene: Achl_3103: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
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Gene: Bfae_12940: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
Gene: BlinB01001220: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
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Gene: JNB_14083: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
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Gene: KRH_04370: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
Gene: Ksed_04080: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
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L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF |
| lldG |
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Gene: Achl_3102: L-lactate dehydrogenase, subunit LldG |
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Gene: Bfae_12930: L-lactate dehydrogenase, subunit LldG |
Gene: BlinB01001221: L-lactate dehydrogenase, subunit LldG |
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Gene: JNB_14088: L-lactate dehydrogenase, subunit LldG |
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Gene: KRH_04380: L-lactate dehydrogenase, subunit LldG |
Gene: Ksed_04090: L-lactate dehydrogenase, subunit LldG |
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L-lactate dehydrogenase, subunit LldG |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |