Regulog Aave_3515 - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/Others
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | 6 | 2 |
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | 4 | 2 |
| Delftia acidovorans SPH-1 | 10 | 2 |
| Leptothrix cholodnii SP-6 | ||
| Methylibium petroleiphilum PM1 | ||
| Polaromonas naphthalenivorans CJ2 | ||
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | 7 | 2 |
| Variovorax paradoxus S110 | ||
| Verminephrobacter eiseniae EF01-2 | 4 | 2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| Daci_5732 |
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Delftia acidovorans SPH-1 Site: position = -127 score = 3.29933 sequence = GGATATTGAACATCC Site: position = -266 score = 3.37151 sequence = TTTTGTTCAACAAAA Gene: Daci_5732: Extracellular ligand-binding receptor |
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Extracellular ligand-binding receptor |
| COG3181 |
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Gene: Daci_5733: hypothetical protein |
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hypothetical protein |
| Daci_5734 |
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Gene: Daci_5734: aromatic amino acid beta-eliminating lyase/threonine aldolase |
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aromatic amino acid beta-eliminating lyase/threonine aldolase |
| Aave_3515 |
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Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -219 score = 3.55809 sequence = CATTGATGAATCATC Site: position = -198 score = 5.27798 sequence = AATTGTTGAACAATT Gene: Aave_3515: Transcriptional regulator, GntR family |
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Comamonas testosteroni KF-1 Site: position = -160 score = 5.54644 sequence = AATTGTTGAACAATC Site: position = -117 score = 3.22448 sequence = GTTTGCAGAACAAAT Gene: CtesDRAFT_4488: Transcriptional regulator, GntR family |
Gene: Daci_5735: Transcriptional regulator, GntR family |
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Rhodoferax ferrireducens DSM 15236 Site: position = -216 score = 4.94196 sequence = TATTGTTGAACAATT Gene: Rfer_0874: Transcriptional regulator, GntR family |
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Gene: Veis_1313: Transcriptional regulator, GntR family |
Transcriptional regulator, GntR family |
| COG3665 |
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Verminephrobacter eiseniae EF01-2 Site: position = -12 score = 5.1113 sequence = GGTTGTTCAACAATG Gene: Veis_1314: Uncharacterized conserved protein |
Uncharacterized conserved protein |
| CRON 2. | ||||||||||||
| COG3819 |
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Comamonas testosteroni KF-1 Site: position = -147 score = 5.54644 sequence = GATTGTTCAACAATT Gene: CtesDRAFT_4489: integral membrane protein |
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Delftia acidovorans SPH-1 Site: position = -105 score = 3.37151 sequence = TTTTGTTGAACAAAA Site: position = -244 score = 3.29933 sequence = GGATGTTCAATATCC Gene: Daci_5731: integral membrane protein |
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Rhodoferax ferrireducens DSM 15236 Site: position = -72 score = 4.94196 sequence = AATTGTTCAACAATA Gene: Rfer_0873: integral membrane protein |
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integral membrane protein |
| COG3817 |
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Gene: CtesDRAFT_4490: integral membrane protein |
Gene: Daci_5730: integral membrane protein |
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Gene: Rfer_0872: integral membrane protein |
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integral membrane protein |
| pcp |
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Gene: CtesDRAFT_4491: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3) |
Gene: Daci_5729: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3) |
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Gene: Bpro_1512: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3) |
Gene: Rfer_0871: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3) |
Gene: Vapar_4364: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3) |
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Pyrrolidone-carboxylate peptidase (EC 3.4.19.3) |
| COG1540 |
Gene: Aave_3513: Uncharacterized proteins, homologs of lactam utilization protein B |
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Gene: CtesDRAFT_4492: Uncharacterized proteins, homologs of lactam utilization protein B |
Gene: Daci_5728: Uncharacterized proteins, homologs of lactam utilization protein B |
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Gene: Rfer_0870: Uncharacterized proteins, homologs of lactam utilization protein B |
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Uncharacterized proteins, homologs of lactam utilization protein B |
| alhAB |
Gene: Aave_3511: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54) |
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Gene: CtesDRAFT_4493: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54) |
Gene: Daci_5727: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54) |
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Gene: Rfer_0869: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54) |
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Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54) |
| alhC |
Gene: Aave_3510: Urea carboxylase (EC 6.3.4.6) |
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Gene: CtesDRAFT_4494: Urea carboxylase (EC 6.3.4.6) |
Gene: Daci_5726: Urea carboxylase (EC 6.3.4.6) |
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Gene: Rfer_0868: Urea carboxylase (EC 6.3.4.6) |
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Urea carboxylase (EC 6.3.4.6) |
| COG2814 |
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Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -53 score = 3.55809 sequence = GATGATTCATCAATG Site: position = -74 score = 5.27798 sequence = AATTGTTCAACAATT Gene: Aave_3514: Major facilitator family transporter |
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Gene: Veis_4743: Major facilitator family transporter |
Major facilitator family transporter |
| COG4336 |
Gene: Aave_3512: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
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Gene: Daci_4977: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
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Gene: Bpro_1776: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
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Gene: Vapar_3292: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
Gene: Veis_4744: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
| CRON 3. | ||||||||||||
| Veis_1310 |
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Verminephrobacter eiseniae EF01-2 Site: position = -100 score = 5.8149 sequence = GATTGTTCAACAATC Gene: Veis_1310: extracellular solute-binding protein, family 3 |
extracellular solute-binding protein, family 3 |
| Veis_1311 |
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Gene: Veis_1311: polar amino acid ABC transporter, inner membrane subunit |
polar amino acid ABC transporter, inner membrane subunit |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |