Regulog Aave_3515 - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 15 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1	6	2
Acidovorax sp. JS42
Comamonas testosteroni KF-1	4	2
Delftia acidovorans SPH-1	10	2
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236	7	2
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2	4	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
Daci_5732	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	* Delftia acidovorans SPH-1 Site: position = -127 score = 3.29933 sequence = GGATATTGAACATCC Site: position = -266 score = 3.37151 sequence = TTTTGTTCAACAAAA Gene: Daci_5732: Extracellular ligand-binding receptor	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Extracellular ligand-binding receptor
COG3181	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_5733: hypothetical protein	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	hypothetical protein
Daci_5734	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_5734: aromatic amino acid beta-eliminating lyase/threonine aldolase	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	aromatic amino acid beta-eliminating lyase/threonine aldolase
Aave_3515	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -219 score = 3.55809 sequence = CATTGATGAATCATC Site: position = -198 score = 5.27798 sequence = AATTGTTGAACAATT Gene: Aave_3515: Transcriptional regulator, GntR family	Acidovorax sp. JS42	* Comamonas testosteroni KF-1 Site: position = -160 score = 5.54644 sequence = AATTGTTGAACAATC Site: position = -117 score = 3.22448 sequence = GTTTGCAGAACAAAT Gene: CtesDRAFT_4488: Transcriptional regulator, GntR family	Delftia acidovorans SPH-1 Gene: Daci_5735: Transcriptional regulator, GntR family	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	* Rhodoferax ferrireducens DSM 15236 Site: position = -216 score = 4.94196 sequence = TATTGTTGAACAATT Gene: Rfer_0874: Transcriptional regulator, GntR family	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_1313: Transcriptional regulator, GntR family	Transcriptional regulator, GntR family
COG3665	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	* Verminephrobacter eiseniae EF01-2 Site: position = -12 score = 5.1113 sequence = GGTTGTTCAACAATG Gene: Veis_1314: Uncharacterized conserved protein	Uncharacterized conserved protein

CRON 2.
COG3819	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	* Comamonas testosteroni KF-1 Site: position = -147 score = 5.54644 sequence = GATTGTTCAACAATT Gene: CtesDRAFT_4489: integral membrane protein	* Delftia acidovorans SPH-1 Site: position = -105 score = 3.37151 sequence = TTTTGTTGAACAAAA Site: position = -244 score = 3.29933 sequence = GGATGTTCAATATCC Gene: Daci_5731: integral membrane protein	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	* Rhodoferax ferrireducens DSM 15236 Site: position = -72 score = 4.94196 sequence = AATTGTTCAACAATA Gene: Rfer_0873: integral membrane protein	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	integral membrane protein
COG3817	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4490: integral membrane protein	Delftia acidovorans SPH-1 Gene: Daci_5730: integral membrane protein	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0872: integral membrane protein	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	integral membrane protein
pcp	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4491: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)	Delftia acidovorans SPH-1 Gene: Daci_5729: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_1512: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0871: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)	Variovorax paradoxus S110 Gene: Vapar_4364: Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)	Verminephrobacter eiseniae EF01-2	Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
COG1540	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_3513: Uncharacterized proteins, homologs of lactam utilization protein B	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4492: Uncharacterized proteins, homologs of lactam utilization protein B	Delftia acidovorans SPH-1 Gene: Daci_5728: Uncharacterized proteins, homologs of lactam utilization protein B	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0870: Uncharacterized proteins, homologs of lactam utilization protein B	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Uncharacterized proteins, homologs of lactam utilization protein B
alhAB	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_3511: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4493: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)	Delftia acidovorans SPH-1 Gene: Daci_5727: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0869: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)
alhC	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_3510: Urea carboxylase (EC 6.3.4.6)	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4494: Urea carboxylase (EC 6.3.4.6)	Delftia acidovorans SPH-1 Gene: Daci_5726: Urea carboxylase (EC 6.3.4.6)	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0868: Urea carboxylase (EC 6.3.4.6)	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Urea carboxylase (EC 6.3.4.6)
COG2814	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -53 score = 3.55809 sequence = GATGATTCATCAATG Site: position = -74 score = 5.27798 sequence = AATTGTTCAACAATT Gene: Aave_3514: Major facilitator family transporter	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_4743: Major facilitator family transporter	Major facilitator family transporter
COG4336	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_3512: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_4977: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_1776: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_3292: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	Verminephrobacter eiseniae EF01-2 Gene: Veis_4744: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	hypothetical protein possibly connected to lactam utilization and allophanate hydrolase

CRON 3.
Veis_1310	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	* Verminephrobacter eiseniae EF01-2 Site: position = -100 score = 5.8149 sequence = GATTGTTCAACAATC Gene: Veis_1310: extracellular solute-binding protein, family 3	extracellular solute-binding protein, family 3
Veis_1311	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_1311: polar amino acid ABC transporter, inner membrane subunit	polar amino acid ABC transporter, inner membrane subunit

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Aave_3515 - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --