Regulog Arth_3541 - Micrococcineae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 14 sites [see more]

Member of regulog collections

By taxonomy - Micrococcineae
By TF family - GntR/Others

Statistics of regulated genes
Genome	Genes	Operons
Arthrobacter aurescens TC1	3	2
Arthrobacter chlorophenolicus A6	4	4
Arthrobacter sp. FB24	4	4
Beutenbergia cavernae DSM 12333
Brachybacterium faecium DSM 4810
Brevibacterium linens BL2
Clavibacter michiganensis subsp. michiganensis NCPPB 382	4	4
Janibacter sp. HTCC2649
Jonesia denitrificans DSM 20603
Kocuria rhizophila DC2201
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
Arth_3541	* Arthrobacter aurescens TC1 Site: position = -105 score = 5.65772 sequence = CGGGTTGTATACAACCTG Gene: AAur_0623: Transcriptional regulator, GntR family	* Arthrobacter chlorophenolicus A6 Site: position = -19 score = 5.03079 sequence = TCTGTTGTATACATAATG Gene: Achl_3241: Transcriptional regulator, GntR family	* Arthrobacter sp. FB24 Site: position = -19 score = 5.07773 sequence = TCTGTTGTATACATGATG Gene: Arth_3541: Transcriptional regulator, GntR family	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	* Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -19 score = 5.04929 sequence = CGTGATGTATACATAGCG Gene: CMM_0733: Transcriptional regulator, GntR family	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Transcriptional regulator, GntR family

CRON 2.
Arth_3540	* Arthrobacter aurescens TC1 Site: position = -134 score = 5.65772 sequence = CAGGTTGTATACAACCCG Gene: AAur_0621: Major facilitator superfamily transporter	* Arthrobacter chlorophenolicus A6 Site: position = -49 score = 5.15345 sequence = CGTAATGTATACATTACA Gene: Achl_3240: Major facilitator superfamily transporter	* Arthrobacter sp. FB24 Site: position = -66 score = 4.86413 sequence = CGTAATGTATACATTTAA Gene: Arth_3540: Major facilitator superfamily transporter	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	* Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -85 score = 5.31134 sequence = CCTACTGTATACAGCACA Gene: CMM_0732: Major facilitator superfamily transporter	Janibacter sp. HTCC2649 Gene: JNB_14188: Major facilitator superfamily transporter	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Major facilitator superfamily transporter
Arth_3542	Arthrobacter aurescens TC1 Gene: AAur_0620: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	* Arthrobacter chlorophenolicus A6 Site: position = -31 score = 5.03079 sequence = CATTATGTATACAACAGA Gene: Achl_3242: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	* Arthrobacter sp. FB24 Site: position = -31 score = 5.07773 sequence = CATCATGTATACAACAGA Gene: Arth_3542: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	* Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -27 score = 5.04929 sequence = CGCTATGTATACATCACG Gene: CMM_0734: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201 Gene: KRH_21850: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase

CRON 3.
Arth_3539	Arthrobacter aurescens TC1	* Arthrobacter chlorophenolicus A6 Site: position = -101 score = 5.15345 sequence = TGTAATGTATACATTACG Gene: Achl_3239: Protein of unknown function DUF2848	* Arthrobacter sp. FB24 Site: position = -100 score = 4.86413 sequence = TTAAATGTATACATTACG Gene: Arth_3539: Protein of unknown function DUF2848	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	* Clavibacter michiganensis subsp. michiganensis NCPPB 382 Site: position = -97 score = 5.31134 sequence = TGTGCTGTATACAGTAGG Gene: CMM_0731: Protein of unknown function DUF2848	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Protein of unknown function DUF2848

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Arth_3541 - Micrococcineae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --