Regulog Znr - Mycobacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	ArsR
Regulation mode:
Biological process:	Zinc homeostasis
Effector:	Zinc ion, (Zn2+)
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 10 sites [see more]

Member of regulog collections

By taxonomy - Mycobacteriaceae
By TF family - ArsR
By effector - Zinc ion, (Zn2+)
By pathway - Zinc homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Mycobacterium abscessus ATCC 19977
Mycobacterium avium 104	2	1
Mycobacterium flavescens PYR-GCK	4	2
Mycobacterium leprae TN	2	1
Mycobacterium marinum M	2	1
Mycobacterium smegmatis str. MC2 155	2	1
Mycobacterium sp. JLS	2	1
Mycobacterium tuberculosis H37Rv	2	1
Mycobacterium vanbaalenii PYR-1	4	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
zocA	Mycobacterium abscessus ATCC 19977	Mycobacterium avium 104	2 Mycobacterium flavescens PYR-GCK* Gene: Mflv_2822: Zinc transporting ATPase (EC 3.6.3.3) Site: position = -1 score = 5.26885 sequence = CATGCGTATTATTGCATG Gene: Mflv_5337: Zinc transporting ATPase (EC 3.6.3.3)	Mycobacterium leprae TN	Mycobacterium marinum M	Mycobacterium smegmatis str. MC2 155	Mycobacterium sp. JLS	Mycobacterium tuberculosis H37Rv	* Mycobacterium vanbaalenii PYR-1 Site: position = -1 score = 5.26885 sequence = CATGCGTATTATTGCATG Gene: Mvan_3700: Zinc transporting ATPase (EC 3.6.3.3)	Zinc transporting ATPase (EC 3.6.3.3)
cyaZ	Mycobacterium abscessus ATCC 19977	Mycobacterium avium 104	2 Mycobacterium flavescens PYR-GCK Gene: Mflv_5336: Adenylate cyclase (EC 4.6.1.1) Gene: Mflv_2823: Adenylate cyclase (EC 4.6.1.1)	Mycobacterium leprae TN	Mycobacterium marinum M	Mycobacterium smegmatis str. MC2 155	Mycobacterium sp. JLS	Mycobacterium tuberculosis H37Rv	Mycobacterium vanbaalenii PYR-1 Gene: Mvan_3699: Adenylate cyclase (EC 4.6.1.1)	Adenylate cyclase (EC 4.6.1.1)

CRON 2.
znr	Mycobacterium abscessus ATCC 19977 Gene: MAB_1679c: Zinc homeostasis transcriptional regulator Znr, ArsR family	* Mycobacterium avium 104 Site: position = -101 score = 6.22312 sequence = CATGCGTCATCATGCATG Gene: MAV_2037: Zinc homeostasis transcriptional regulator Znr, ArsR family	* Mycobacterium flavescens PYR-GCK Site: position = -11 score = 5.66829 sequence = CATGCACGGGCGTGCATG Gene: Mflv_2718: Zinc homeostasis transcriptional regulator Znr, ArsR family	* Mycobacterium leprae TN Site: position = -80 score = 6.07746 sequence = CATGCGCCATCACGCATG Gene: ML0825: Zinc homeostasis transcriptional regulator Znr, ArsR family	* Mycobacterium marinum M Site: position = -104 score = 6.26717 sequence = CATGCATCATCATGCATG Gene: MMAR_3668: Zinc homeostasis transcriptional regulator Znr, ArsR family	* Mycobacterium smegmatis str. MC2 155 Site: position = -50 score = 4.98448 sequence = CATGCGAATCAGCGCATG Gene: MSMEG_4486: Zinc homeostasis transcriptional regulator Znr, ArsR family	* Mycobacterium sp. JLS Site: position = -34 score = 5.36633 sequence = CATGCGAATCGATGCATG Gene: Mjls_3457: Zinc homeostasis transcriptional regulator Znr, ArsR family	* Mycobacterium tuberculosis H37Rv Site: position = -81 score = 6.26717 sequence = CATGCATCATCATGCATG Gene: Rv2358: Zinc homeostasis transcriptional regulator Znr, ArsR family	* Mycobacterium vanbaalenii PYR-1 Site: position = -32 score = 6.06368 sequence = CATGCACGGTCACGCATG Gene: Mvan_3819: Zinc homeostasis transcriptional regulator Znr, ArsR family	Zinc homeostasis transcriptional regulator Znr, ArsR family
zur	Mycobacterium abscessus ATCC 19977 Gene: MAB_1678c: Zinc homeostasis transcriptional regulator Zur, Fur family	Mycobacterium avium 104 Gene: MAV_2036: Zinc homeostasis transcriptional regulator Zur, Fur family	Mycobacterium flavescens PYR-GCK Gene: Mflv_2717: Zinc homeostasis transcriptional regulator Zur, Fur family	Mycobacterium leprae TN Gene: ML0824: Zinc homeostasis transcriptional regulator Zur, Fur family	Mycobacterium marinum M Gene: MMAR_3669: Zinc homeostasis transcriptional regulator Zur, Fur family	Mycobacterium smegmatis str. MC2 155 Gene: MSMEG_4487: Zinc homeostasis transcriptional regulator Zur, Fur family	Mycobacterium sp. JLS Gene: Mjls_3458: Zinc homeostasis transcriptional regulator Zur, Fur family	Mycobacterium tuberculosis H37Rv Gene: Rv2359: Zinc homeostasis transcriptional regulator Zur, Fur family	Mycobacterium vanbaalenii PYR-1 Gene: Mvan_3820: Zinc homeostasis transcriptional regulator Zur, Fur family	Zinc homeostasis transcriptional regulator Zur, Fur family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Znr - Mycobacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --