Regulog BioR - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | |
| Phylum: | Alphaproteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - GntR/Others
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Agrobacterium tumefaciens str. C58 (Cereon) | 5 | 1 |
| Azorhizobium caulinodans ORS 571 | 3 | 2 |
| Bartonella quintana str. Toulouse | ||
| Bradyrhizobium japonicum USDA 110 | 6 | 2 |
| Bradyrhizobium sp. BTAi1 | 5 | 2 |
| Brucella melitensis 16M | 7 | 3 |
| Mesorhizobium loti MAFF303099 | 2 | 1 |
| Mesorhizobium sp. BNC1 | ||
| Nitrobacter winogradskyi Nb-255 | ||
| Rhizobium etli CFN 42 | ||
| Rhizobium leguminosarum bv. viciae 3841 | ||
| Rhizobium sp. NGR234 | 5 | 1 |
| Rhodopseudomonas palustris CGA009 | ||
| Sinorhizobium meliloti 1021 | ||
| Xanthobacter autotrophicus Py2 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| bioB |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = 85 score = 4.82597 sequence = TTATCTATAA Gene: Atu3997: Biotin synthase (EC 2.8.1.6) |
Gene: AZC_0361: Biotin synthase (EC 2.8.1.6) |
|
*
Bradyrhizobium japonicum USDA 110 Site: position = -46 score = 4.39409 sequence = CTATAGATAA Site: position = -27 score = 4.32371 sequence = TTATCTACAA Gene: blr2095: Biotin synthase (EC 2.8.1.6) |
*
Bradyrhizobium sp. BTAi1 Site: position = -49 score = 4.22582 sequence = TTATAGATTA Gene: BBta_2776: Biotin synthase (EC 2.8.1.6) |
*
Brucella melitensis 16M Site: position = -92 score = 4.22582 sequence = TTATCTATTA Site: position = -22 score = 4.32371 sequence = TTATCTACAA Gene: BMEII0775: Biotin synthase (EC 2.8.1.6) |
3
Mesorhizobium loti MAFF303099 Gene: mll9100: Biotin synthase (EC 2.8.1.6) Gene: mll6007: Biotin synthase (EC 2.8.1.6) Gene: mll5831: Biotin synthase (EC 2.8.1.6) |
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Gene: Nwi_0243: Biotin synthase (EC 2.8.1.6) |
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*
Rhizobium sp. NGR234 Site: position = -60 score = 4.39409 sequence = CTATAGATAA Gene: NGR_c25140: Biotin synthase (EC 2.8.1.6) |
Gene: RPA2045: Biotin synthase (EC 2.8.1.6) |
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Gene: Xaut_1117: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| panD |
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Gene: blr2096: Aspartate 1-decarboxylase (EC 4.1.1.11) |
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aspartate alpha-decarboxylase |
| bioF |
Gene: Atu3998: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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Gene: blr2097: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: BBta_2777: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: BMEII0776: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
3
Mesorhizobium loti MAFF303099 Gene: mll9099: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Gene: mll6006: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Gene: mll5830: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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Gene: Nwi_2421: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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Gene: NGR_c25130: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
Gene: RPA2972: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
|
Gene: Xaut_2918: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| bioD |
Gene: Atu3999: Dethiobiotin synthetase (EC 6.3.3.3) |
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Gene: blr2098: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: BBta_2778: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: BMEII0777: Dethiobiotin synthetase (EC 6.3.3.3) |
3
Mesorhizobium loti MAFF303099 Gene: mll9098: Dethiobiotin synthetase (EC 6.3.3.3) Gene: mll6005: Dethiobiotin synthetase (EC 6.3.3.3) Gene: mll5829: Dethiobiotin synthetase (EC 6.3.3.3) |
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Gene: Nwi_2420: Dethiobiotin synthetase (EC 6.3.3.3) |
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Gene: NGR_c25120: Dethiobiotin synthetase (EC 6.3.3.3) |
Gene: RPA2971: Dethiobiotin synthetase (EC 6.3.3.3) |
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Gene: Xaut_2919: Dethiobiotin synthetase (EC 6.3.3.3) |
Dethiobiotin synthetase (EC 6.3.3.3) |
| bioA |
Gene: Atu4000: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Gene: blr2099: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: BBta_2779: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: BMEII0778: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
3
Mesorhizobium loti MAFF303099 Gene: mll9097: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Gene: mll6003: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Gene: mll5828: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Gene: Nwi_2419: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Gene: NGR_c25110: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Gene: RPA2970: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Gene: Xaut_2920: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
| bioZ |
*
Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -105 score = 4.06166 sequence = TTATCGATGA Gene: Atu4001: Biotin synthesis protein bioZ |
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Gene: BMEII0779: Biotin synthesis protein bioZ |
2
Mesorhizobium loti MAFF303099 Gene: mll9094: Biotin synthesis protein bioZ Gene: mll5827: Biotin synthesis protein bioZ |
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Gene: NGR_c25100: Biotin synthesis protein bioZ |
Gene: RPA1298: Biotin synthesis protein bioZ |
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Gene: Xaut_2921: Biotin synthesis protein bioZ |
Biotin synthesis protein bioZ |
| bioR |
Gene: Atu0791: Biotin metabolism regulatory protein BioR, GntR family |
*
Azorhizobium caulinodans ORS 571 Site: position = -13 score = 4.82597 sequence = TTATCTATAA Gene: AZC_0363: Biotin metabolism regulatory protein BioR, GntR family |
|
*
Bradyrhizobium japonicum USDA 110 Site: position = -97 score = 4.32371 sequence = TTGTAGATAA Site: position = -78 score = 4.39409 sequence = TTATCTATAG Gene: bll2094: Biotin metabolism regulatory protein BioR, GntR family |
*
Bradyrhizobium sp. BTAi1 Site: position = -83 score = 4.22582 sequence = TAATCTATAA Gene: BBta_2775: Biotin metabolism regulatory protein BioR, GntR family |
*
Brucella melitensis 16M Site: position = -14 score = 4.82597 sequence = TTATCTATAA Gene: BMEI0320: Biotin metabolism regulatory protein BioR, GntR family |
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Mesorhizobium loti MAFF303099 Site: position = -13 score = 4.82597 sequence = TTATCTATAA Gene: mlr7428: Biotin metabolism regulatory protein BioR, GntR family |
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Gene: NGR_c05470: Biotin metabolism regulatory protein BioR, GntR family |
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Biotin metabolism regulatory protein BioR, GntR family |
| bioY |
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*2
Azorhizobium caulinodans ORS 571 Gene: AZC_2177: Substrate-specific component BioY of biotin ECF transporter Site: position = 28 score = 4.82597 sequence = TTATCTATAA Gene: AZC_0362: Substrate-specific component BioY of biotin ECF transporter |
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*
Brucella melitensis 16M Site: position = -22 score = 4.82597 sequence = TTATCTATAA Gene: BMEI0319: Substrate-specific component BioY of biotin ECF transporter |
Gene: mlr7429: Substrate-specific component BioY of biotin ECF transporter |
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Gene: Xaut_4329: Substrate-specific component BioY of biotin ECF transporter |
Substrate-specific component BioY of biotin ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |