Regulog BioR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Biotin biosynthesis
Effector:
Phylum:	Alphaproteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 16 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - GntR/Others
By pathway - Biotin biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)	5	1
Azorhizobium caulinodans ORS 571	3	2
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110	6	2
Bradyrhizobium sp. BTAi1	5	2
Brucella melitensis 16M	7	3
Mesorhizobium loti MAFF303099	2	1
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234	5	1
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
bioB	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = 85 score = 4.82597 sequence = TTATCTATAA Gene: Atu3997: Biotin synthase (EC 2.8.1.6)	Azorhizobium caulinodans ORS 571 Gene: AZC_0361: Biotin synthase (EC 2.8.1.6)	Bartonella quintana str. Toulouse	* Bradyrhizobium japonicum USDA 110 Site: position = -46 score = 4.39409 sequence = CTATAGATAA Site: position = -27 score = 4.32371 sequence = TTATCTACAA Gene: blr2095: Biotin synthase (EC 2.8.1.6)	* Bradyrhizobium sp. BTAi1 Site: position = -49 score = 4.22582 sequence = TTATAGATTA Gene: BBta_2776: Biotin synthase (EC 2.8.1.6)	* Brucella melitensis 16M Site: position = -92 score = 4.22582 sequence = TTATCTATTA Site: position = -22 score = 4.32371 sequence = TTATCTACAA Gene: BMEII0775: Biotin synthase (EC 2.8.1.6)	3 Mesorhizobium loti MAFF303099 Gene: mll9100: Biotin synthase (EC 2.8.1.6) Gene: mll6007: Biotin synthase (EC 2.8.1.6) Gene: mll5831: Biotin synthase (EC 2.8.1.6)	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255 Gene: Nwi_0243: Biotin synthase (EC 2.8.1.6)	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	* Rhizobium sp. NGR234 Site: position = -60 score = 4.39409 sequence = CTATAGATAA Gene: NGR_c25140: Biotin synthase (EC 2.8.1.6)	Rhodopseudomonas palustris CGA009 Gene: RPA2045: Biotin synthase (EC 2.8.1.6)	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_1117: Biotin synthase (EC 2.8.1.6)	Biotin synthase (EC 2.8.1.6)
panD	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr2096: Aspartate 1-decarboxylase (EC 4.1.1.11)	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	aspartate alpha-decarboxylase
bioF	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3998: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr2097: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Bradyrhizobium sp. BTAi1 Gene: BBta_2777: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Brucella melitensis 16M Gene: BMEII0776: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	3 Mesorhizobium loti MAFF303099 Gene: mll9099: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Gene: mll6006: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) Gene: mll5830: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255 Gene: Nwi_2421: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_c25130: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Rhodopseudomonas palustris CGA009 Gene: RPA2972: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_2918: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)	8-amino-7-oxononanoate synthase (EC 2.3.1.47)
bioD	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3999: Dethiobiotin synthetase (EC 6.3.3.3)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr2098: Dethiobiotin synthetase (EC 6.3.3.3)	Bradyrhizobium sp. BTAi1 Gene: BBta_2778: Dethiobiotin synthetase (EC 6.3.3.3)	Brucella melitensis 16M Gene: BMEII0777: Dethiobiotin synthetase (EC 6.3.3.3)	3 Mesorhizobium loti MAFF303099 Gene: mll9098: Dethiobiotin synthetase (EC 6.3.3.3) Gene: mll6005: Dethiobiotin synthetase (EC 6.3.3.3) Gene: mll5829: Dethiobiotin synthetase (EC 6.3.3.3)	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255 Gene: Nwi_2420: Dethiobiotin synthetase (EC 6.3.3.3)	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_c25120: Dethiobiotin synthetase (EC 6.3.3.3)	Rhodopseudomonas palustris CGA009 Gene: RPA2971: Dethiobiotin synthetase (EC 6.3.3.3)	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_2919: Dethiobiotin synthetase (EC 6.3.3.3)	Dethiobiotin synthetase (EC 6.3.3.3)
bioA	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4000: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: blr2099: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Bradyrhizobium sp. BTAi1 Gene: BBta_2779: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Brucella melitensis 16M Gene: BMEII0778: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	3 Mesorhizobium loti MAFF303099 Gene: mll9097: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Gene: mll6003: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) Gene: mll5828: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255 Gene: Nwi_2419: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_c25110: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Rhodopseudomonas palustris CGA009 Gene: RPA2970: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_2920: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
bioZ	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -105 score = 4.06166 sequence = TTATCGATGA Gene: Atu4001: Biotin synthesis protein bioZ	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M Gene: BMEII0779: Biotin synthesis protein bioZ	2 Mesorhizobium loti MAFF303099 Gene: mll9094: Biotin synthesis protein bioZ Gene: mll5827: Biotin synthesis protein bioZ	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_c25100: Biotin synthesis protein bioZ	Rhodopseudomonas palustris CGA009 Gene: RPA1298: Biotin synthesis protein bioZ	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_2921: Biotin synthesis protein bioZ	Biotin synthesis protein bioZ
bioR	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0791: Biotin metabolism regulatory protein BioR, GntR family	* Azorhizobium caulinodans ORS 571 Site: position = -13 score = 4.82597 sequence = TTATCTATAA Gene: AZC_0363: Biotin metabolism regulatory protein BioR, GntR family	Bartonella quintana str. Toulouse	* Bradyrhizobium japonicum USDA 110 Site: position = -97 score = 4.32371 sequence = TTGTAGATAA Site: position = -78 score = 4.39409 sequence = TTATCTATAG Gene: bll2094: Biotin metabolism regulatory protein BioR, GntR family	* Bradyrhizobium sp. BTAi1 Site: position = -83 score = 4.22582 sequence = TAATCTATAA Gene: BBta_2775: Biotin metabolism regulatory protein BioR, GntR family	* Brucella melitensis 16M Site: position = -14 score = 4.82597 sequence = TTATCTATAA Gene: BMEI0320: Biotin metabolism regulatory protein BioR, GntR family	* Mesorhizobium loti MAFF303099 Site: position = -13 score = 4.82597 sequence = TTATCTATAA Gene: mlr7428: Biotin metabolism regulatory protein BioR, GntR family	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_c05470: Biotin metabolism regulatory protein BioR, GntR family	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Biotin metabolism regulatory protein BioR, GntR family
bioY	Agrobacterium tumefaciens str. C58 (Cereon)	2 Azorhizobium caulinodans ORS 571* Gene: AZC_2177: Substrate-specific component BioY of biotin ECF transporter Site: position = 28 score = 4.82597 sequence = TTATCTATAA Gene: AZC_0362: Substrate-specific component BioY of biotin ECF transporter	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	* Brucella melitensis 16M Site: position = -22 score = 4.82597 sequence = TTATCTATAA Gene: BMEI0319: Substrate-specific component BioY of biotin ECF transporter	Mesorhizobium loti MAFF303099 Gene: mlr7429: Substrate-specific component BioY of biotin ECF transporter	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_4329: Substrate-specific component BioY of biotin ECF transporter	Substrate-specific component BioY of biotin ECF transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BioR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --