Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog UriR - Listeriaceae

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Nucleoside utilization
Effector: Pyrimidine nucleoside
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Listeria innocua Clip11262 1 1
Listeria monocytogenes EGD-e 1 1
Listeria seeligeri serovar 1/2b str. SLCC3954 1 1
Listeria welshimeri serovar 6b str. SLCC5334 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdp
*
Listeria innocua Clip11262

Site:
position = -89
score = 7.06151
sequence = TTAGTAAAACGGTTTACTTA

Gene: lin2101: Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
*
Listeria monocytogenes EGD-e

Site:
position = -89
score = 7.06151
sequence = TTAGTAAAACGGTTTACTTA

Gene: lmo1993: Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
*
Listeria seeligeri serovar 1/2b str. SLCC3954

Site:
position = -90
score = 6.76825
sequence = TTAGTAAAACGGTTTACTTG

Gene: lse_1975: Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
*
Listeria welshimeri serovar 6b str. SLCC5334

Site:
position = -89
score = 7.06151
sequence = TTAGTAAAACGGTTTACTTA

Gene: lwe2013: Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise