Regulog ScrR - Clostridia-1

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Sucrose utilization
Effector:	Sucrose-6-phosphate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Clostridia-1
By TF family - LacI
By effector - Sucrose-6-phosphate
By pathway - Sucrose utilization

Statistics of regulated genes
Genome	Genes	Operons
Clostridium acetobutylicum ATCC 824
Clostridium beijerincki NCIMB 8052	4	1
Clostridium botulinum A str. ATCC 3502
Clostridium butyricum 5521
Clostridium kluyveri DSM 555
Clostridium novyi NT
Clostridium perfringens ATCC 13124	4	1
Clostridium tetani E88

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
scrA	Clostridium acetobutylicum ATCC 824	* Clostridium beijerincki NCIMB 8052 Site: position = -68 score = 6.66501 sequence = ATATGGAACTGGTATCATAT Gene: Cbei_5012: Sucrose specific PTS system, IIABC component (EC 2.7.1.69)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	* Clostridium perfringens ATCC 13124 Site: position = -244 score = 5.93541 sequence = TTATGAAACTAATTCCATAT Site: position = -71 score = 6.66501 sequence = ATATGGAACTGATACCATAT Gene: CPF_1785: Sucrose specific PTS system, IIABC component (EC 2.7.1.69)	Clostridium tetani E88	Sucrose specific PTS system, IIABC component (EC 2.7.1.69)
scrR	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052 Gene: Cbei_5011: Sucrose utilization transcriptional regulator ScrR, LacI family	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521 Gene: CBY_3743: Sucrose utilization transcriptional regulator ScrR, LacI family	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124 Gene: CPF_1784: Sucrose utilization transcriptional regulator ScrR, LacI family	Clostridium tetani E88	Sucrose utilization transcriptional regulator ScrR, LacI family
scrB	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052 Gene: Cbei_5010: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521 Gene: CBY_3744: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124 Gene: CPF_1783: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)	Clostridium tetani E88	Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
scrK	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052 Gene: Cbei_5009: Fructokinase (EC 2.7.1.4)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521 Gene: CBY_3745: Fructokinase (EC 2.7.1.4)	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124 Gene: CPF_1782: Fructokinase (EC 2.7.1.4)	Clostridium tetani E88	Fructokinase (EC 2.7.1.4)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog ScrR - Clostridia-1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --