Regulog SmoR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Sorbitol utilization; Mannitol utilization
Effector:	Mannitol; Sorbitol
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - LacI
By effector - Mannitol
By effector - Sorbitol
By pathway - Sorbitol utilization
By pathway - Mannitol utilization

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)	9	2
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099	3	2
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42	2	1
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021	6	1
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
SMb21377	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -114 score = 5.48668 sequence = AAATTGACGCGCGGTAAGTT Gene: SMb21377: Ribose/xylose/arabinose/galactoside ABC-type transport systems, substrate-binding component	Xanthobacter autotrophicus Py2	Ribose/xylose/arabinose/galactoside ABC-type transport systems, substrate-binding component
SMb21376	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb21376: Putative ribose/galactose/methyl galactoside import ATP-binding protein 1 (EC 3.6.3.17)	Xanthobacter autotrophicus Py2	Putative ribose/galactose/methyl galactoside import ATP-binding protein 1 (EC 3.6.3.17)
SMb21375	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb21375: Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components	Xanthobacter autotrophicus Py2	Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
fruK	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -285 score = 5.20743 sequence = AACAATACATGCGTAAATTT Site: position = -98 score = 6.03487 sequence = ATATTGACGCGCGTAAACTT Gene: Atu3166: Fructokinase (EC 2.7.1.4)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	* Mesorhizobium loti MAFF303099 Site: position = -123 score = 5.00592 sequence = AGAGTTGCGCGCGTCAAATT Gene: mll7216: Fructokinase (EC 2.7.1.4)	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -289 score = 5.52982 sequence = AAAATTACATGCGTAAACTT Site: position = -114 score = 5.59785 sequence = AAATTGTCACGCGTCAAATT Gene: RHE_PC00220: Fructokinase (EC 2.7.1.4)	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb21374: Fructokinase (EC 2.7.1.4)	Xanthobacter autotrophicus Py2	Fructokinase (EC 2.7.1.4)
agaZ	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3167: Tagatose 6-phosphate kinase	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll7215: Tagatose 6-phosphate kinase	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PC00221: Tagatose 6-phosphate kinase	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb21373: Tagatose 6-phosphate kinase	Xanthobacter autotrophicus Py2	Tagatose 6-phosphate kinase
smoR	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3162: Transcriptional regulator for sorbitol and mannitol utilization, LacI family	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	* Mesorhizobium loti MAFF303099 Site: position = -157 score = 5.00592 sequence = AATTTGACGCGCGCAACTCT Gene: mlr7217: Transcriptional regulator for sorbitol and mannitol utilization, LacI family	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PC00216: Transcriptional regulator for sorbitol and mannitol utilization, LacI family	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb21372: Transcriptional regulator for sorbitol and mannitol utilization, LacI family	Xanthobacter autotrophicus Py2	Transcriptional regulator for sorbitol and mannitol utilization, LacI family
smoF	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3168: ABC transporter, membrane spanning protein (sorbitol/mannitol)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	ABC transporter, membrane spanning protein (sorbitol/mannitol)
smoG	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3169: ABC transporter, membrane spanning protein (sorbitol/mannitol)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	ABC transporter, membrane spanning protein (sorbitol/mannitol)
smoK	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3170: ABC transporter, nucleotide binding/ATPase protein (sorbitol/mannitol)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	ABC transporter, nucleotide binding/ATPase protein (sugar)
smoE	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -114 score = 5.20743 sequence = AAATTTACGCATGTATTGTT Gene: Atu3165: ABC transporter, substrate binding protein (sorbitol/mannitol)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	ABC transporter, substrate binding protein (sorbitol/mannitol)
smoS	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3164: sorbitol dehydrogenase	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	sorbitol dehydrogenase
Atu3163	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3163: zinc-binding dehydrogenase	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	zinc-binding dehydrogenase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SmoR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --