Regulog MocR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Rhizopine catabolism
Effector:	rhizopine
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 12 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - LacI
By effector - rhizopine
By pathway - Rhizopine catabolism

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099	4	2
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42	4	2
Rhizobium leguminosarum bv. viciae 3841	4	2
Rhizobium sp. NGR234	4	2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021	4	2
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
mocR	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	2 Mesorhizobium loti MAFF303099* Gene: mll5838: Transcriptional regulator, LacI family Site: position = -67 score = 5.36427 sequence = AAAGATAGTTTCTATCATT Gene: mll4997: Transcriptional regulator, LacI family	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -67 score = 5.75716 sequence = CTTGATGTAATCTATCAAA Gene: RHE_PE00447: Transcriptional regulator, LacI family	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -68 score = 6.04578 sequence = CTTGATATAATCTATCAAA Site: position = -26 score = 4.85484 sequence = CATGATTGAATCCATCAGG Gene: pRL110623: Transcriptional regulator, LacI family	* Rhizobium sp. NGR234 Site: position = -74 score = 5.64775 sequence = CATGATATATTCTCTCAAA Gene: NGR_b17120: Transcriptional regulator, LacI family	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -71 score = 5.64775 sequence = CATGATATATTCTCTCAAT Gene: SMb20817: Transcriptional regulator, LacI family	Xanthobacter autotrophicus Py2	Transcriptional regulator, LacI family

CRON 2.
mocD	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	* Mesorhizobium loti MAFF303099 Site: position = -117 score = 5.36427 sequence = AATGATAGAAACTATCTTT Gene: mlr4998: putative hydrocarbon oxygenase MocD	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -81 score = 5.75716 sequence = TTTGATAGATTACATCAAG Gene: RHE_PE00446: putative hydrocarbon oxygenase MocD	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -124 score = 4.85484 sequence = CCTGATGGATTCAATCATG Site: position = -82 score = 6.04578 sequence = TTTGATAGATTATATCAAG Gene: pRL110622: putative hydrocarbon oxygenase MocD	* Rhizobium sp. NGR234 Site: position = -104 score = 5.64775 sequence = TTTGAGAGAATATATCATG Gene: NGR_b17110: putative hydrocarbon oxygenase MocD	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -153 score = 5.64775 sequence = ATTGAGAGAATATATCATG Gene: SM_b20818: putative hydrocarbon oxygenase MocD	Xanthobacter autotrophicus Py2	putative hydrocarbon oxygenase MocD
mocE	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mlr4999: putative Rieske-like ferredoxin MocE	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PE00445: putative Rieske-like ferredoxin MocE	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL110621: putative Rieske-like ferredoxin MocE	Rhizobium sp. NGR234 Gene: NGR_b17100: putative Rieske-like ferredoxin MocE	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20819: putative Rieske-like ferredoxin MocE	Xanthobacter autotrophicus Py2	putative Rieske-like ferredoxin MocE
mocF	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mlr5000: putative ferredoxin reductase protein MocF	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PE00444: putative ferredoxin reductase protein MocF	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL110620: putative ferredoxin reductase protein MocF	Rhizobium sp. NGR234 Gene: NGR_b17090: putative ferredoxin reductase protein MocF	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMb20820: putative ferredoxin reductase protein MocF	Xanthobacter autotrophicus Py2	putative ferredoxin reductase protein MocF

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog MocR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --