Regulog NanR - Staphylococcaceae
| Regulator type: | Transcription factor |
| Regulator family: | RpiR |
| Regulation mode: | repressor |
| Biological process: | Sialic acid utilization; N-acetylglucosamine utilization |
| Effector: | N-acetylmannosamine-6-phosphate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By TF family - RpiR
- By effector - N-acetylmannosamine-6-phosphate
- By pathway - Sialic acid utilization
- By pathway - N-acetylglucosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Macrococcus caseolyticus JCSC5402 | ||
| Staphylococcus aureus subsp. aureus N315 | 5 | 4 |
| Staphylococcus capitis SK14 | ||
| Staphylococcus carnosus subsp. carnosus TM300 | 6 | 4 |
| Staphylococcus epidermidis ATCC 12228 | ||
| Staphylococcus haemolyticus JCSC1435 | 7 | 5 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 8 | 5 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| nanK |
|
*
Staphylococcus aureus subsp. aureus N315 Site: position = -42 score = 6.12542 sequence = ATGAAAATGTTTTTCAA Gene: SA0305: N-acetylmannosamine kinase (EC 2.7.1.60) |
|
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -86 score = 6.28652 sequence = ATGAAAATAATTTTCAA Gene: Sca_2390: N-acetylmannosamine kinase (EC 2.7.1.60) |
|
*
Staphylococcus haemolyticus JCSC1435 Site: position = -84 score = 6.25065 sequence = ATGAAAATATTTTTCAA Gene: SH0281: N-acetylmannosamine kinase (EC 2.7.1.60) |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -90 score = 6.25065 sequence = ATGAAAATATTTTTCAA Gene: SSP0374: N-acetylmannosamine kinase (EC 2.7.1.60) |
N-acetylmannosamine kinase (EC 2.7.1.60) |
| CRON 2. | ||||||||
| nanR |
|
*
Staphylococcus aureus subsp. aureus N315 Site: position = -53 score = 6.25065 sequence = TTGAAAATATTTTTCAT Gene: SA0306: Sialic acid utilization regulator NanR, RpiR family |
|
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -58 score = 6.25065 sequence = TTGAAAAAAATTTTCAT Gene: Sca_2391: Sialic acid utilization regulator NanR, RpiR family |
|
*
Staphylococcus haemolyticus JCSC1435 Site: position = -57 score = 6.21478 sequence = TTGAAAAATATTTTCAA Gene: SH0280: Sialic acid utilization regulator NanR, RpiR family |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -58 score = 6.16129 sequence = ATGAAAAACATTTTCAT Gene: SSP0373: Sialic acid utilization regulator NanR, RpiR family |
Sialic acid utilization regulator NanR, RpiR family |
| CRON 3. | ||||||||
| nagE |
|
|
|
|
|
*
Staphylococcus haemolyticus JCSC1435 Site: position = -124 score = 6.12542 sequence = TTGAAAATGTTTTTCAT Gene: SH0358: N-acetylglucosamine specific PTS, EIIABC component |
*2
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0234: N-acetylglucosamine specific PTS, EIIABC component Site: position = -85 score = 5.82456 sequence = ATGAAAATATTTTTCGT Gene: SSP0233: N-acetylglucosamine specific PTS, EIIABC component |
N-acetylglucosamine specific PTS, EIIABC component |
| nagB |
|
Gene: SA0527: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: STACA0001_0462: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
2
Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0227: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Gene: Sca_2393: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: SE0340: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: SH0278: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
2
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP0235: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) Gene: SSP2149: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
| nanE |
|
*
Staphylococcus aureus subsp. aureus N315 Site: position = -103 score = 6.25065 sequence = ATGAAAAATATTTTCAA Gene: SA0307: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
|
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -124 score = 6.25065 sequence = ATGAAAATTTTTTTCAA Gene: Sca_2392: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
|
*
Staphylococcus haemolyticus JCSC1435 Site: position = -132 score = 6.21478 sequence = TTGAAAATATTTTTCAA Gene: SH0279: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -125 score = 6.16129 sequence = ATGAAAATGTTTTTCAT Gene: SSP0372: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
| CRON 4. | ||||||||
| nanA |
|
*
Staphylococcus aureus subsp. aureus N315 Site: position = -132 score = 6.12542 sequence = TTGAAAAACATTTTCAT Gene: SA0304: N-acetylneuraminate lyase (EC 4.1.3.3) |
|
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -176 score = 6.28652 sequence = TTGAAAATTATTTTCAT Gene: Sca_2389: N-acetylneuraminate lyase (EC 4.1.3.3) |
|
*
Staphylococcus haemolyticus JCSC1435 Site: position = -175 score = 6.25065 sequence = TTGAAAAATATTTTCAT Gene: SH0282: N-acetylneuraminate lyase (EC 4.1.3.3) |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -250 score = 6.25065 sequence = TTGAAAAATATTTTCAT Gene: SSP0375: N-acetylneuraminate lyase (EC 4.1.3.3) |
N-acetylneuraminate lyase (EC 4.1.3.3) |
| nanT |
|
Gene: SA0303: N-Acetylneuraminic acid permease |
|
Gene: Sca_2388: N-Acetylneuraminic acid permease |
|
Gene: SH0283: N-Acetylneuraminic acid permease |
Gene: SSP0376: N-Acetylneuraminic acid permease |
N-Acetylneuraminic acid permease |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |