Regulog TPP - Helicobacteraceae

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine transport; Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Phylum:	Proteobacteria/Epsilon

Member of regulog collections

By taxonomy - Helicobacteraceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine transport
By pathway - Thiamine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Wolinella succinogenes DSM 1740
Helicobacter pylori J99	2	1
Helicobacter pullorum MIT 98-5489
Helicobacter hepaticus ATCC 51449
Helicobacter canadensis MIT 98-5491
Helicobacter acinonychis str. Sheeba	2	1
Helicobacter cinaedi CCUG 18818
Helicobacter mustelae 12198	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
omp_thi	Wolinella succinogenes DSM 1740	Helicobacter pylori J99	Helicobacter pullorum MIT 98-5489	Helicobacter hepaticus ATCC 51449	Helicobacter canadensis MIT 98-5491	Helicobacter acinonychis str. Sheeba	Helicobacter cinaedi CCUG 18818	* Helicobacter mustelae 12198 Site: position = -150 score = 52.99 sequence = GCCTACAAGTGACGG... Gene: HMU13980: Predicted thiamin-specific outer membrane transporter, TonB-dependent	Predicted thiamin-specific outer membrane transporter, TonB-dependent

CRON 2.
pnuT	Wolinella succinogenes DSM 1740	* Helicobacter pylori J99 Site: position = -97 score = 49.45 sequence = GAGCATTTAAGGGGT... Gene: jhp1210: Predicted thiamin transporter PnuT	Helicobacter pullorum MIT 98-5489	Helicobacter hepaticus ATCC 51449	Helicobacter canadensis MIT 98-5491	* Helicobacter acinonychis str. Sheeba Site: position = -98 score = 46.65 sequence = GAGAATTTAAGGGGT... Gene: Hac_0206: Predicted thiamin transporter PnuT	Helicobacter cinaedi CCUG 18818	Helicobacter mustelae 12198 Gene: HMU12480: Predicted thiamin transporter PnuT	Predicted thiamin transporter PnuT
tnr3	Wolinella succinogenes DSM 1740	Helicobacter pylori J99 Gene: jhp1211: Thiamin pyrophosphokinase (EC 2.7.6.2)	Helicobacter pullorum MIT 98-5489	Helicobacter hepaticus ATCC 51449	Helicobacter canadensis MIT 98-5491	Helicobacter acinonychis str. Sheeba Gene: Hac_0207: Thiamin pyrophosphokinase (EC 2.7.6.2)	Helicobacter cinaedi CCUG 18818	Helicobacter mustelae 12198 Gene: HMU12490: Thiamin pyrophosphokinase (EC 2.7.6.2)	Thiamin pyrophosphokinase (EC 2.7.6.2)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TPP - Helicobacteraceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --