Regulog TPP - Helicobacteraceae
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine transport; Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria/Epsilon |
Member of regulog collections
- By taxonomy - Helicobacteraceae
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine transport
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Wolinella succinogenes DSM 1740 | ||
| Helicobacter pylori J99 | 2 | 1 |
| Helicobacter pullorum MIT 98-5489 | ||
| Helicobacter hepaticus ATCC 51449 | ||
| Helicobacter canadensis MIT 98-5491 | ||
| Helicobacter acinonychis str. Sheeba | 2 | 1 |
| Helicobacter cinaedi CCUG 18818 | ||
| Helicobacter mustelae 12198 | 1 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| omp_thi |
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Helicobacter mustelae 12198 Site: position = -150 score = 52.99 sequence = GCCTACAAGTGACGG... Gene: HMU13980: Predicted thiamin-specific outer membrane transporter, TonB-dependent |
Predicted thiamin-specific outer membrane transporter, TonB-dependent |
| CRON 2. | |||||||||
| pnuT |
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Helicobacter pylori J99 Site: position = -97 score = 49.45 sequence = GAGCATTTAAGGGGT... Gene: jhp1210: Predicted thiamin transporter PnuT |
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Helicobacter acinonychis str. Sheeba Site: position = -98 score = 46.65 sequence = GAGAATTTAAGGGGT... Gene: Hac_0206: Predicted thiamin transporter PnuT |
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Gene: HMU12480: Predicted thiamin transporter PnuT |
Predicted thiamin transporter PnuT |
| tnr3 |
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Gene: jhp1211: Thiamin pyrophosphokinase (EC 2.7.6.2) |
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Gene: Hac_0207: Thiamin pyrophosphokinase (EC 2.7.6.2) |
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Gene: HMU12490: Thiamin pyrophosphokinase (EC 2.7.6.2) |
Thiamin pyrophosphokinase (EC 2.7.6.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |