Regulog FMN - Bifidobacteriaceae
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Actinobacteria |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Bifidobacterium angulatum DSM 20098 | 2 | 1 |
| Bifidobacterium bifidum NCIMB 41171 | 2 | 1 |
| Gardnerella vaginalis 409-05 | 2 | 1 |
| Bifidobacterium breve DSM 20213 | 2 | 1 |
| Bifidobacterium adolescentis ATCC 15703 | 2 | 1 |
| Bifidobacterium longum NCC2705 | 2 | 1 |
| Bifidobacterium gallicum DSM 20093 | 2 | 1 |
| Bifidobacterium dentium Bd1 | 2 | 1 |
| Bifidobacterium animalis subsp. lactis AD011 | 2 | 1 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| ribU |
*
Bifidobacterium angulatum DSM 20098 Site: position = -177 score = 83.43 sequence = CCGTAAGTTTCAGGG... Gene: BIFANG_00999: Substrate-specific component RibU of riboflavin ECF transporter |
*
Bifidobacterium bifidum NCIMB 41171 Site: position = -159 score = 73.1 sequence = AAGCAAGTTTCAGGG... Gene: BbifN4_010100002939: Substrate-specific component RibU of riboflavin ECF transporter |
*
Gardnerella vaginalis 409-05 Site: position = -152 score = 97.33 sequence = GTTAGTTTCAGGGAA... Gene: HMPREF0424_0823: Substrate-specific component RibU of riboflavin ECF transporter |
*
Bifidobacterium breve DSM 20213 Site: position = -138 score = 88.19 sequence = CTGTCAGTTTCAGGG... Gene: BIFBRE_00572: Substrate-specific component RibU of riboflavin ECF transporter |
*
Bifidobacterium adolescentis ATCC 15703 Site: position = -222 score = 81.02 sequence = AAGCAAGTTTCAGGG... Gene: BAD_0962: Substrate-specific component RibU of riboflavin ECF transporter |
*
Bifidobacterium longum NCC2705 Site: position = -159 score = 88.65 sequence = CTGTCAGTTTCAGGG... Gene: BL0044: Substrate-specific component RibU of riboflavin ECF transporter |
*
Bifidobacterium gallicum DSM 20093 Site: position = -137 score = 81.84 sequence = CATAGTTTCAGGGAA... Gene: BIFGAL_01827: Substrate-specific component RibU of riboflavin ECF transporter |
*
Bifidobacterium dentium Bd1 Site: position = -157 score = 76.81 sequence = ACAAGTTTCAGGGAA... Gene: BDP_1337: Substrate-specific component RibU of riboflavin ECF transporter |
*
Bifidobacterium animalis subsp. lactis AD011 Site: position = -148 score = 75.02 sequence = AGTGCAATTTCAGGG... Gene: BLA_1217: Substrate-specific component RibU of riboflavin ECF transporter |
Substrate-specific component RibU of riboflavin ECF transporter |
| ecfAAT |
Gene: BIFANG_00998: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter |
Gene: BbifN4_010100002934: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter |
Gene: HMPREF0424_0824: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter |
Gene: BIFBRE_00571: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter |
Gene: BAD_0961: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter |
Gene: BL0043: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter |
Gene: BIFGAL_01828: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter |
Gene: BDP_1338: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter |
Gene: BLA_1216: Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter |
Duplicated ATPase component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter / Transmembrane component of energizing module of riboflavin ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |