Regulog TPP - Francisellaceae

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Phylum:	Proteobacteria/Gamma

Member of regulog collections

By taxonomy - Francisellaceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Francisella tularensis subsp. tularensis SCHU S4	1	1
Francisella novicida FTE	1	1
Francisella philomiragia subsp. philomiragia ATCC 25017	7	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes				Function

CRON 1.
PF04193	* Francisella tularensis subsp. tularensis SCHU S4 Site: position = -160 score = 61.39 sequence = GAAAAGACAACAGGG... Gene: FTT_1046c: Predicted thiamine transporter, Francisella-specific	* Francisella novicida FTE Site: position = -289 score = 61.39 sequence = GAAAAGACAACAGGG... Gene: FTE_1169: Predicted thiamine transporter, Francisella-specific	* Francisella philomiragia subsp. philomiragia ATCC 25017 Site: position = -162 score = 57.62 sequence = GAAGACAACAGGGGT... Gene: Fphi_1693: Predicted thiamine transporter, Francisella-specific	Predicted thiamine transporter, Francisella-specific

CRON 2.
thiC	Francisella tularensis subsp. tularensis SCHU S4	Francisella novicida FTE	* Francisella philomiragia subsp. philomiragia ATCC 25017 Site: position = -198 score = 66.48 sequence = ACCGAAAACACAGGG... Gene: Fphi_0090: Thiamin biosynthesis protein ThiC	Thiamin biosynthesis protein ThiC
thiO	Francisella tularensis subsp. tularensis SCHU S4	Francisella novicida FTE	Francisella philomiragia subsp. philomiragia ATCC 25017 Gene: Fphi_0089: Glycine oxidase ThiO (EC 1.4.3.19)	Glycine oxidase ThiO (EC 1.4.3.19)
thiS	Francisella tularensis subsp. tularensis SCHU S4	Francisella novicida FTE	Francisella philomiragia subsp. philomiragia ATCC 25017 Gene: Fphi_1923: Sulfur carrier protein ThiS	Sulfur carrier protein ThiS
thiG	Francisella tularensis subsp. tularensis SCHU S4	Francisella novicida FTE	Francisella philomiragia subsp. philomiragia ATCC 25017 Gene: Fphi_0088: Thiazole biosynthesis protein ThiG	Thiazole biosynthesis protein ThiG
thiDE	Francisella tularensis subsp. tularensis SCHU S4	Francisella novicida FTE	Francisella philomiragia subsp. philomiragia ATCC 25017 Gene: Fphi_0087: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiF	Francisella tularensis subsp. tularensis SCHU S4	Francisella novicida FTE	Francisella philomiragia subsp. philomiragia ATCC 25017 Gene: Fphi_0086: Sulfur carrier protein adenylyltransferase ThiF	Sulfur carrier protein adenylyltransferase ThiF

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TPP - Francisellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --