Regulog TPP - Francisellaceae
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria/Gamma |
Member of regulog collections
- By taxonomy - Francisellaceae
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Francisella tularensis subsp. tularensis SCHU S4 | 1 | 1 |
| Francisella novicida FTE | 1 | 1 |
| Francisella philomiragia subsp. philomiragia ATCC 25017 | 7 | 2 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| PF04193 |
*
Francisella tularensis subsp. tularensis SCHU S4 Site: position = -160 score = 61.39 sequence = GAAAAGACAACAGGG... Gene: FTT_1046c: Predicted thiamine transporter, Francisella-specific |
*
Francisella novicida FTE Site: position = -289 score = 61.39 sequence = GAAAAGACAACAGGG... Gene: FTE_1169: Predicted thiamine transporter, Francisella-specific |
*
Francisella philomiragia subsp. philomiragia ATCC 25017 Site: position = -162 score = 57.62 sequence = GAAGACAACAGGGGT... Gene: Fphi_1693: Predicted thiamine transporter, Francisella-specific |
Predicted thiamine transporter, Francisella-specific |
| CRON 2. | ||||
| thiC |
|
|
*
Francisella philomiragia subsp. philomiragia ATCC 25017 Site: position = -198 score = 66.48 sequence = ACCGAAAACACAGGG... Gene: Fphi_0090: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
| thiO |
|
|
Gene: Fphi_0089: Glycine oxidase ThiO (EC 1.4.3.19) |
Glycine oxidase ThiO (EC 1.4.3.19) |
| thiS |
|
|
Gene: Fphi_1923: Sulfur carrier protein ThiS |
Sulfur carrier protein ThiS |
| thiG |
|
|
Gene: Fphi_0088: Thiazole biosynthesis protein ThiG |
Thiazole biosynthesis protein ThiG |
| thiDE |
|
|
Gene: Fphi_0087: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| thiF |
|
|
Gene: Fphi_0086: Sulfur carrier protein adenylyltransferase ThiF |
Sulfur carrier protein adenylyltransferase ThiF |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |