Regulog FMN - Francisellaceae
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Proteobacteria/Gamma |
Member of regulog collections
- By taxonomy - Francisellaceae
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Francisella philomiragia subsp. philomiragia ATCC 25017 | 4 | 1 |
| Francisella tularensis subsp. tularensis SCHU S4 | 4 | 1 |
| Francisella novicida FTE | 4 | 1 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| ribD |
*
Francisella philomiragia subsp. philomiragia ATCC 25017 Site: position = -256 score = 128.01 sequence = ATAATCTTCAGGGCA... Gene: Fphi_0713: 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) / Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) |
*
Francisella tularensis subsp. tularensis SCHU S4 Site: position = -269 score = 128.4 sequence = ATAATCTTCAGGGCA... Gene: FTT_1671: 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) / Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) |
*
Francisella novicida FTE Site: position = -271 score = 128.28 sequence = AAATAATCTTCAGGG... Gene: FTE_0404: 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) / Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) |
5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) / Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) |
| ribE |
Gene: Fphi_0714: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: FTT_1672: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: FTE_0403: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Riboflavin synthase alpha chain (EC 2.5.1.9) |
| ribBA |
Gene: Fphi_0715: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: FTT_1673: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: FTE_0402: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
| ribH |
Gene: Fphi_0716: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: FTT_1674: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: FTE_0401: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |