Regulog FMN - Clostridia-3
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridia-3
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Clostridiales bacterium 1_7_47_FAA | 5 | 2 |
| Clostridium bolteae ATCC BAA-613 | 5 | 2 |
| Eubacterium eligens ATCC 27750 | 4 | 1 |
| Roseburia intestinalis L1-82 | 2 | 2 |
| Ruminococcus gnavus ATCC 29149 | 1 | 1 |
| Dorea longicatena DSM 13814 | 5 | 2 |
| Blautia hansenii DSM 20583 | 5 | 2 |
| Clostridium nexile DSM 1787 | 1 | 1 |
| Clostridium scindens ATCC 35704 | 2 | 2 |
| Eubacterium rectale ATCC 33656 | 5 | 2 |
| Ruminococcus lactaris ATCC 29176 | 1 | 1 |
| Dorea formicigenerans ATCC 27755 | 5 | 2 |
| Bryantella formatexigens DSM 14469 | 1 | 1 |
| Bacteroides pectinophilus ATCC 43243 | 1 | 1 |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| ribD |
*
Clostridiales bacterium 1_7_47_FAA Site: position = -499 score = 113.67 sequence = AATATCTTCAGGGCA... Gene: Cbac1_010100006733: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Clostridium bolteae ATCC BAA-613 Site: position = -688 score = 117.1 sequence = AATATCTTCAGGGCA... Gene: CLOBOL_02805: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Eubacterium eligens ATCC 27750 Site: position = -847 score = 109.32 sequence = TATGGAACTTCAGGG... Gene: EUBELI_20114: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Roseburia intestinalis L1-82 Site: position = -384 score = 114.49 sequence = ATGATCTTCAGGGCA... Gene: ROSINTL182_02839: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
|
*
Dorea longicatena DSM 13814 Site: position = -280 score = 111.5 sequence = ACGAAATCTTCAGGG... Gene: DORLON_02764: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Blautia hansenii DSM 20583 Site: position = -289 score = 119.85 sequence = ATAAAATCTTCAGGG... Gene: BLAHAN_02906: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
|
|
*
Eubacterium rectale ATCC 33656 Site: position = -345 score = 107.53 sequence = AATTATTCTTCAGGG... Gene: EUBREC_3132: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
|
*
Dorea formicigenerans ATCC 27755 Site: position = -288 score = 113.03 sequence = GAAATCTTCAGGGCA... Gene: DORFOR_00288: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
|
|
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
| ribE |
Gene: Cbac1_010100006738: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: CLOBOL_02806: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: EUBELI_20113: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: ROSINTL182_02841: Riboflavin synthase alpha chain (EC 2.5.1.9) |
|
Gene: DORLON_02763: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: BLAHAN_02905: Riboflavin synthase alpha chain (EC 2.5.1.9) |
|
|
Gene: EUBREC_3131: Riboflavin synthase alpha chain (EC 2.5.1.9) |
|
Gene: DORFOR_00289: Riboflavin synthase alpha chain (EC 2.5.1.9) |
|
|
Riboflavin synthase alpha chain (EC 2.5.1.9) |
| ribBA |
Gene: Cbac1_010100006743: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: CLOBOL_02807: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: EUBELI_20112: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: ROSINTL182_02842: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
|
Gene: DORLON_02762: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: BLAHAN_02904: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
|
|
Gene: EUBREC_3130: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
|
Gene: DORFOR_00290: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
|
|
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
| ribH |
Gene: Cbac1_010100006748: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: CLOBOL_02808: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: EUBELI_20111: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: ROSINTL182_02843: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
Gene: DORLON_02761: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: BLAHAN_02903: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
|
Gene: EUBREC_3129: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
Gene: DORFOR_00291: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
|
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
| CRON 2. | |||||||||||||||
| ribU |
*
Clostridiales bacterium 1_7_47_FAA Site: position = -127 score = 108.14 sequence = ATAAGTTCTTCGGGG... Gene: Cbac1_010100023592: Substrate-specific component RibU of riboflavin ECF transporter |
*
Clostridium bolteae ATCC BAA-613 Site: position = -352 score = 114.43 sequence = TAAAGTTCTTCGGGG... Gene: CLOBOL_02256: Substrate-specific component RibU of riboflavin ECF transporter |
Gene: EUBELI_20519: Substrate-specific component RibU of riboflavin ECF transporter |
*
Roseburia intestinalis L1-82 Site: position = -152 score = 88.51 sequence = TAATTCTTCGGGGCA... Gene: ROSINTL182_01713: Substrate-specific component RibU of riboflavin ECF transporter |
*
Ruminococcus gnavus ATCC 29149 Site: position = -272 score = 97.39 sequence = AATAAATCTTCGGGG... Gene: RUMGNA_02978: Substrate-specific component RibU of riboflavin ECF transporter |
*
Dorea longicatena DSM 13814 Site: position = -315 score = 101.27 sequence = AGATTCTTCGGGGCA... Gene: DORLON_02252: Substrate-specific component RibU of riboflavin ECF transporter |
*
Blautia hansenii DSM 20583 Site: position = -211 score = 117.85 sequence = AGAAATTCTTCGGGG... Gene: BLAHAN_01242: Substrate-specific component RibU of riboflavin ECF transporter |
*
Clostridium nexile DSM 1787 Site: position = -239 score = 113.38 sequence = GGATTCTTCGGGGCA... Gene: CLONEX_02849: Substrate-specific component RibU of riboflavin ECF transporter |
*2
Clostridium scindens ATCC 35704 Site: position = -142 score = 109.59 sequence = AGAGATTCTTCGGGG... Gene: CLOSCI_02146: Substrate-specific component RibU of riboflavin ECF transporter Site: position = -192 score = 91.41 sequence = GAAGTCTTTGTGGCA... Gene: CLOSCI_02942: Substrate-specific component RibU of riboflavin ECF transporter |
*
Eubacterium rectale ATCC 33656 Site: position = -244 score = 110.32 sequence = GAATTCTTCAGGGCA... Gene: EUBREC_0834: Substrate-specific component RibU of riboflavin ECF transporter |
*
Ruminococcus lactaris ATCC 29176 Site: position = -312 score = 92.51 sequence = GTAATCTTCGGGGTC... Gene: RUMLAC_02357: Substrate-specific component RibU of riboflavin ECF transporter |
*
Dorea formicigenerans ATCC 27755 Site: position = -348 score = 119.79 sequence = AGAGATTCTTCGGGG... Gene: DORFOR_03135: Substrate-specific component RibU of riboflavin ECF transporter |
*
Bryantella formatexigens DSM 14469 Site: position = -202 score = 114.9 sequence = GAAATCTTCGGGGCA... Gene: BRYFOR_03730: Substrate-specific component RibU of riboflavin ECF transporter |
*
Bacteroides pectinophilus ATCC 43243 Site: position = -213 score = 64.11 sequence = GAATGAACGGCAGAT... Gene: BACPEC_00730: Substrate-specific component RibU of riboflavin ECF transporter |
Substrate-specific component RibU of riboflavin ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |