Regulog TPP - Desulfuromonadales
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria/Delta |
Member of regulog collections
- By taxonomy - Desulfuromonadales
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Geobacter metallireducens GS-15 | 5 | 2 |
| Geobacter sulfurreducens PCA | 6 | 2 |
| Geobacter uraniumreducens Rf4 | 6 | 2 |
| Geobacter sp. FRC-32 | ||
| Geobacter sp. M21 | 1 | 1 |
| Geobacter lovleyi SZ | 6 | 2 |
| Pelobacter propionicus DSM 2379 | 7 | 2 |
| Pelobacter carbinolicus str. DSM 2380 | 7 | 2 |
| Desulfuromonas acetoxidans DSM 684 | 7 | 2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| thiED |
*
Geobacter metallireducens GS-15 Site: position = -164 score = 74.19 sequence = CAGCCTGCTGGGGGA... Gene: Gmet_2909: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Geobacter sulfurreducens PCA Site: position = -169 score = 86.31 sequence = CATAGTCTGCTGGGG... Gene: GSU0605: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Geobacter uraniumreducens Rf4 Site: position = -188 score = 78.62 sequence = TTGCCAGCTAGGGGA... Gene: Gura_3851: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Geob_1418: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Geobacter sp. M21 Site: position = -381 score = 80.18 sequence = AAGCCAGCTAGGGGA... Gene: GM21_3528: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Geobacter lovleyi SZ Site: position = -167 score = 65.22 sequence = CGTCGCCCTGGGGGA... Gene: Glov_2763: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Pelobacter propionicus DSM 2379 Site: position = -181 score = 75.03 sequence = TAAGGCCCTGGGGGA... Gene: Ppro_2595: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*2
Pelobacter carbinolicus str. DSM 2380 Gene: Pcar_2175: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Phosphomethylpyrimidine kinase (EC 2.7.4.7) Site: position = -169 score = 70.7 sequence = ATAACCGCTAGGGGC... Gene: Pcar_2235: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Desulfuromonas acetoxidans DSM 684 Site: position = -105 score = 68.35 sequence = ATGGCTGCTGGGGGA... Gene: Dace_0922: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
| thiC |
Gene: Gmet_2910: Thiamin biosynthesis protein ThiC |
Gene: GSU0604: Thiamin biosynthesis protein ThiC |
Gene: Gura_3852: Thiamin biosynthesis protein ThiC |
Gene: Geob_1417: Thiamin biosynthesis protein ThiC |
Gene: GM21_3529: Thiamin biosynthesis protein ThiC |
Gene: Glov_2764: Thiamin biosynthesis protein ThiC |
2
Pelobacter propionicus DSM 2379 Gene: Ppro_1034: Thiamin biosynthesis protein ThiC Gene: Ppro_2596: Thiamin biosynthesis protein ThiC |
2
Pelobacter carbinolicus str. DSM 2380 Gene: Pcar_0337: Thiamin biosynthesis protein ThiC Gene: Pcar_2236: Thiamin biosynthesis protein ThiC |
Gene: Dace_0923: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
| Ppro_2597 |
|
|
|
|
|
|
Gene: Ppro_2597: hypothetical protein |
|
|
hypothetical protein |
| CRON 2. | ||||||||||
| thiF |
|
|
|
|
|
|
|
*
Pelobacter carbinolicus str. DSM 2380 Site: position = -164 score = 71.14 sequence = AGATAGGCCCTGGGG... Gene: Pcar_0611: Sulfur carrier protein adenylyltransferase ThiF |
*
Desulfuromonas acetoxidans DSM 684 Site: position = -180 score = 68.97 sequence = TGAAAAGCCCTGGGG... Gene: Dace_1222: Sulfur carrier protein adenylyltransferase ThiF |
Sulfur carrier protein adenylyltransferase ThiF |
| thiS |
*
Geobacter metallireducens GS-15 Site: position = -99 score = 72.26 sequence = CAACTCGCTAGGGGA... Gene: Gmet_2933: Thiamine biosynthesis protein ThiS |
*
Geobacter sulfurreducens PCA Site: position = -227 score = 60.03 sequence = ATCGAACCGCTAGGG... Gene: GSU0589: Thiamine biosynthesis protein ThiS |
*
Geobacter uraniumreducens Rf4 Site: position = -177 score = 72.56 sequence = TACATCGCTGGGGGA... Gene: Gura_3658: Thiamine biosynthesis protein ThiS |
Gene: Geob_1588: Thiamine biosynthesis protein ThiS |
Gene: GM21_0667: Thiamine biosynthesis protein ThiS |
*
Geobacter lovleyi SZ Site: position = -154 score = 78.55 sequence = TAAACCGCTAGGGGA... Gene: Glov_0035: Thiamine biosynthesis protein ThiS |
*
Pelobacter propionicus DSM 2379 Site: position = -146 score = 72.11 sequence = AAAAACGCTGGGGGA... Gene: Ppro_3474: Thiamine biosynthesis protein ThiS |
Gene: Pcar_0610: Thiamine biosynthesis protein ThiS |
Gene: Dace_1221: Thiamine biosynthesis protein ThiS |
Thiamine biosynthesis protein ThiS |
| thiG |
Gene: Gmet_2934: Thiazole synthase |
Gene: GSU0588: Thiazole synthase |
Gene: Gura_3659: Thiazole synthase |
Gene: Geob_1587: Thiazole synthase |
Gene: GM21_0666: Thiazole synthase |
Gene: Glov_0036: Thiazole synthase |
Gene: Ppro_3475: Thiazole synthase |
Gene: Pcar_0609: Thiazole synthase |
Gene: Dace_1220: Thiazole synthase |
Thiazole synthase |
| thiH |
|
|
|
|
|
|
|
Gene: Pcar_0608: Thiazole biosynthesis ThiH |
Gene: Dace_1219: Thiazole biosynthesis ThiH |
Thiazole biosynthesis ThiH |
| thiE |
Gene: Gmet_2935: Thiamine monophosphate synthase |
Gene: GSU0587: Thiamine monophosphate synthase |
Gene: Gura_3660: Thiamine monophosphate synthase |
Gene: Geob_1586: Thiamine monophosphate synthase |
Gene: GM21_0665: Thiamine monophosphate synthase |
Gene: Glov_0037: Thiamine monophosphate synthase |
Gene: Ppro_3476: Thiamine monophosphate synthase |
Gene: Pcar_0607: Thiamine monophosphate synthase |
Gene: Dace_1218: Thiamine monophosphate synthase |
Thiamine monophosphate synthase |
| COG1242 |
Gene: Gmet_2936: Predicted Fe-S oxidoreductase |
Gene: GSU0586: Predicted Fe-S oxidoreductase |
Gene: Gura_3661: Predicted Fe-S oxidoreductase |
Gene: Geob_1585: Predicted Fe-S oxidoreductase |
Gene: GM21_0664: Predicted Fe-S oxidoreductase |
Gene: Glov_0038: Predicted Fe-S oxidoreductase |
Gene: Ppro_3477: Predicted Fe-S oxidoreductase |
|
|
Predicted Fe-S oxidoreductase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |