Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TPP - Sphingomonadales

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Proteobacteria/Alpha
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Erythrobacter litoralis HTCC2594 2 1
Erythrobacter sp. NAP1 1 1
Novosphingobium aromaticivorans DSM 12444 1 1
Sphingopyxis alaskensis RB2256 1 1
Sphingobium japonicum UT26S 2 1
Sphingomonas wittichii RW1 1 1
Zymomonas mobilis subsp. mobilis ZM4 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ELI_09805
*
Erythrobacter litoralis HTCC2594

Site:
position = -160
score = 56.87
sequence = CTGCCCATCCCCGGG...

Gene: ELI_09805: hypothetical protein
 
Erythrobacter sp. NAP1
 
Novosphingobium aromaticivorans DSM 12444
 
Sphingopyxis alaskensis RB2256
*
Sphingobium japonicum UT26S

Site:
position = -167
score = 56.45
sequence = CGGGACATCCCCGGG...

Gene: SJA_C1-33690: hypothetical protein
 
Sphingomonas wittichii RW1
 
Zymomonas mobilis subsp. mobilis ZM4
hypothetical protein
thiC
 
Erythrobacter litoralis HTCC2594

Gene: ELI_09800: Thiamin biosynthesis protein ThiC
*
Erythrobacter sp. NAP1

Site:
position = -149
score = 56.61
sequence = AGTCATCCCCGGGGA...

Gene: NAP1_10193: Thiamin biosynthesis protein ThiC
*
Novosphingobium aromaticivorans DSM 12444

Site:
position = -156
score = 57.49
sequence = CTCATACCCCGGGGA...

Gene: Saro_1824: Thiamin biosynthesis protein ThiC
*
Sphingopyxis alaskensis RB2256

Site:
position = -167
score = 70.59
sequence = CTCCATCCCCGGGGA...

Gene: Sala_2370: Thiamin biosynthesis protein ThiC
 
Sphingobium japonicum UT26S

Gene: SJA_C1-33680: Thiamin biosynthesis protein ThiC
*
Sphingomonas wittichii RW1

Site:
position = -147
score = 53.8
sequence = TTACATCCCCGGGGA...

Gene: Swit_3201: Thiamin biosynthesis protein ThiC
*
Zymomonas mobilis subsp. mobilis ZM4

Site:
position = -180
score = 69.29
sequence = AGGCATCCCCGGGGG...

Gene: ZMO0172: Thiamin biosynthesis protein ThiC
Thiamin biosynthesis protein ThiC
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD