Regulog TPP - Sphingomonadales
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria/Alpha |
Member of regulog collections
- By taxonomy - Sphingomonadales
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Erythrobacter litoralis HTCC2594 | 2 | 1 |
| Erythrobacter sp. NAP1 | 1 | 1 |
| Novosphingobium aromaticivorans DSM 12444 | 1 | 1 |
| Sphingopyxis alaskensis RB2256 | 1 | 1 |
| Sphingobium japonicum UT26S | 2 | 1 |
| Sphingomonas wittichii RW1 | 1 | 1 |
| Zymomonas mobilis subsp. mobilis ZM4 | 1 | 1 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| ELI_09805 |
*
Erythrobacter litoralis HTCC2594 Site: position = -160 score = 56.87 sequence = CTGCCCATCCCCGGG... Gene: ELI_09805: hypothetical protein |
|
|
|
*
Sphingobium japonicum UT26S Site: position = -167 score = 56.45 sequence = CGGGACATCCCCGGG... Gene: SJA_C1-33690: hypothetical protein |
|
|
hypothetical protein |
| thiC |
Gene: ELI_09800: Thiamin biosynthesis protein ThiC |
*
Erythrobacter sp. NAP1 Site: position = -149 score = 56.61 sequence = AGTCATCCCCGGGGA... Gene: NAP1_10193: Thiamin biosynthesis protein ThiC |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -156 score = 57.49 sequence = CTCATACCCCGGGGA... Gene: Saro_1824: Thiamin biosynthesis protein ThiC |
*
Sphingopyxis alaskensis RB2256 Site: position = -167 score = 70.59 sequence = CTCCATCCCCGGGGA... Gene: Sala_2370: Thiamin biosynthesis protein ThiC |
Gene: SJA_C1-33680: Thiamin biosynthesis protein ThiC |
*
Sphingomonas wittichii RW1 Site: position = -147 score = 53.8 sequence = TTACATCCCCGGGGA... Gene: Swit_3201: Thiamin biosynthesis protein ThiC |
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -180 score = 69.29 sequence = AGGCATCCCCGGGGG... Gene: ZMO0172: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |