Regulog TPP - Various betaproteobacteria
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria/Beta |
Member of regulog collections
- By taxonomy - Various betaproteobacteria
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Azoarcus sp. EbN1 | 2 | 1 |
| Thauera sp. MZ1T | 2 | 1 |
| Dechloromonas aromatica RCB | 1 | 1 |
| Nitrosomonas europaea ATCC 19718 | 1 | 1 |
| Nitrosospira multiformis ATCC 25196 | 1 | 1 |
| Thiobacillus denitrificans | 1 | 1 |
| Chromobacterium violaceum ATCC 12472 | 5 | 2 |
| Neisseria meningitidis MC58 | 4 | 2 |
| Laribacter hongkongensis HLHK9 | 4 | 1 |
| Methylobacillus flagellatus KT | 3 | 3 |
| Methylotenera mobilis JLW8 | 1 | 1 |
| Methylophilales bacterium HTCC2181 | 1 | 1 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| omp_thi |
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*
Methylobacillus flagellatus KT Site: position = -171 score = 58.13 sequence = CGCCACGCTAGGGGT... Gene: Mfla_1993: Predicted thiamin-specific outer membrane transporter, TonB-dependent |
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Predicted thiamin-specific outer membrane transporter, TonB-dependent |
| CRON 2. | |||||||||||||
| thiM |
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*
Laribacter hongkongensis HLHK9 Site: position = -151 score = 50.69 sequence = CAACCGTGACTCGGG... Gene: LHK_02662: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
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Hydroxyethylthiazole kinase (EC 2.7.1.50) |
| thiE |
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Gene: LHK_02661: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
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Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| thiD |
*
Azoarcus sp. EbN1 Site: position = -146 score = 62.0 sequence = CAGCTCGTTGGGGGT... Gene: ebA1711: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
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Thauera sp. MZ1T Site: position = -88 score = 63.68 sequence = GCTCTCGTTGGGGGT... Gene: Tmz1t_3463: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
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Gene: LHK_02660: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
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Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
| thiC |
Gene: ebA1712: Thiamin biosynthesis protein ThiC |
Gene: Tmz1t_3464: Thiamin biosynthesis protein ThiC |
*
Dechloromonas aromatica RCB Site: position = -151 score = 64.5 sequence = GCCCACTCGTTAGGG... Gene: Daro_3921: Thiamin biosynthesis protein ThiC |
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Nitrosomonas europaea ATCC 19718 Site: position = -138 score = 51.74 sequence = GCTGTGGCTAGGGGT... Gene: NE0038: Thiamin biosynthesis protein ThiC |
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Nitrosospira multiformis ATCC 25196 Site: position = -196 score = 33.07 sequence = GCAGCAGCTAGGGGT... Gene: Nmul_A2285: Thiamin biosynthesis protein ThiC |
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Thiobacillus denitrificans Site: position = -185 score = 52.14 sequence = ACCCGCTCGCCAGGG... Gene: Tbd_2694: Thiamin biosynthesis protein ThiC |
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Chromobacterium violaceum ATCC 12472 Site: position = -223 score = 50.43 sequence = GGCATCGCTAGGGGT... Gene: CV0235: Thiamin biosynthesis protein ThiC |
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Neisseria meningitidis MC58 Site: position = -193 score = 63.98 sequence = AACATTGAAACAGGG... Gene: NMB2040: Thiamin biosynthesis protein ThiC |
Gene: LHK_02659: Thiamin biosynthesis protein ThiC |
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Methylobacillus flagellatus KT Site: position = -181 score = 62.62 sequence = CTTCCATCGCTAGGG... Gene: Mfla_2530: Thiamin biosynthesis protein ThiC |
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Methylotenera mobilis JLW8 Site: position = -181 score = 62.53 sequence = CGCTAATTGCTAGGG... Gene: Mmol_0035: Thiamin biosynthesis protein ThiC |
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Methylophilales bacterium HTCC2181 Site: position = -132 score = 64.13 sequence = CCTACTGCTAGGGGT... Gene: MB2181_01330: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
| CRON 3. | |||||||||||||
| cytX |
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Neisseria meningitidis MC58 Site: position = -169 score = 62.35 sequence = GCTCCTTGTCGGAGT... Gene: NMB2067: Predicted hydroxymethylpyrimidine transporter CytX |
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Predicted hydroxymethylpyrimidine transporter CytX |
| thiO |
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Gene: NMB2068: Glycine oxidase ThiO (EC 1.4.3.19) |
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Glycine oxidase ThiO (EC 1.4.3.19) |
| thiE |
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Gene: NMB2069: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
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Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| CRON 4. | |||||||||||||
| Mfla_1786 |
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Methylobacillus flagellatus KT Site: position = -150 score = 62.89 sequence = ACCTAACCTAGGGGA... Gene: Mfla_1786: predicted thaimine salvage transporter, Na+/solute symporter PutP family |
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predicted thaimine salvage transporter, Na+/solute symporter PutP family |
| CRON 5. | |||||||||||||
| thiB |
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Chromobacterium violaceum ATCC 12472 Site: position = -146 score = 64.34 sequence = GCCCTGTCACCGGGG... Gene: CV3164: Thiamin ABC transporter, substrate-binding component |
Gene: NMB0041: Thiamin ABC transporter, substrate-binding component |
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Thiamin ABC transporter, substrate-binding component |
| CV3163 |
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Gene: CV3163: conserved hypothetical protein |
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hypothetical acyltransferase |
| thiP |
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Gene: CV3162: Thiamin ABC transporter, transmembrane component |
Gene: NMB2026: Thiamin ABC transporter, transmembrane component |
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Thiamin ABC transporter, transmembrane component |
| thiQ |
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Gene: CV3161: Thiamin ABC transporter, ATPase component |
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Thiamin ABC transporter, ATPase component |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |