Regulog FMN - Comamonadaceae
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Proteobacteria/Beta |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | 1 | 1 |
| Comamonas testosteroni KF-1 | 1 | 1 |
| Delftia acidovorans SPH-1 | 1 | 1 |
| Polaromonas naphthalenivorans CJ2 | ||
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | 1 | 1 |
| Verminephrobacter eiseniae EF01-2 | ||
| Methylibium petroleiphilum PM1 | ||
| Leptothrix cholodnii SP-6 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| ribB |
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Acidovorax sp. JS42 Site: position = -319 score = 71.97 sequence = GGCAGGTCTTCAGGG... Gene: Ajs_2261: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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3,4-dihydroxy-2-butanone 4-phosphate synthase |
| CRON 2. | ||||||||||||
| ribH2 |
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Comamonas testosteroni KF-1 Site: position = -203 score = 101.69 sequence = GCAGCGTTCTCAGGG... Gene: CtesDRAFT_2527: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
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Delftia acidovorans SPH-1 Site: position = -277 score = 92.17 sequence = AGCGTTCTCAGGGCG... Gene: Daci_2196: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
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Variovorax paradoxus S110 Site: position = -266 score = 91.13 sequence = CAAGCGTTCTCAGGG... Gene: Vapar_1854: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
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6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |