Regulog TPP - Xanthomonadales
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria/Gamma |
Member of regulog collections
- By taxonomy - Xanthomonadales
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Xylella fastidiosa 9a5c | 1 | 1 |
| Xanthomonas axonopodis pv. citri str. 306 | 1 | 1 |
| Xanthomonas campestris pv. campestris str. ATCC 33913 | 1 | 1 |
| Stenotrophomonas maltophilia K279a | 3 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| thiC |
*
Xylella fastidiosa 9a5c Site: position = -170 score = 54.07 sequence = CTTTGAAGCGGGGGT... Gene: XF1888: Thiamin biosynthesis protein ThiC |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -190 score = 59.9 sequence = GCCGCCGAAGTGGGG... Gene: XAC3447: Thiamin biosynthesis protein ThiC |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -214 score = 58.71 sequence = GCCGCCGAAGTGGGG... Gene: XCC3319: Thiamin biosynthesis protein ThiC |
*
Stenotrophomonas maltophilia K279a Site: position = -184 score = 59.97 sequence = CACCAAGAAGCGGGG... Gene: Smlt3909: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
| CRON 2. | |||||
| omp_thi |
|
Gene: XAC3529: Predicted thiamin-specific outer membrane transporter, TonB-dependent |
Gene: XCC0674: Predicted thiamin-specific outer membrane transporter, TonB-dependent |
*
Stenotrophomonas maltophilia K279a Site: position = -168 score = 62.62 sequence = TCACCTGAAGCGGGG... Gene: Smlt0190: Predicted thiamin-specific outer membrane transporter, TonB-dependent |
Predicted thiamin-specific outer membrane transporter, TonB-dependent |
| pnuT |
|
Gene: XAC3531: Predicted thiamin transporter PnuT |
Gene: XCC0673: Predicted thiamin transporter PnuT |
Gene: Smlt0189: Predicted thiamin transporter PnuT |
Predicted thiamin transporter PnuT |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |