Regulog TPP - Moraxellaceae
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria/Gamma |
Member of regulog collections
- By taxonomy - Moraxellaceae
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Acinetobacter sp. ADP1 | 1 | 1 |
| Acinetobacter baumannii AB0057 | 1 | 1 |
| Psychrobacter arcticum 273-4 | 1 | 1 |
| Psychrobacter sp. PRwf-1 | 4 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| thiM |
|
|
|
*
Psychrobacter sp. PRwf-1 Site: position = -191 score = 69.05 sequence = TAAGTTATCACAGGG... Gene: PsycPRwf_0830: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Hydroxyethylthiazole kinase (EC 2.7.1.50) |
| thiE |
|
|
|
Gene: PsycPRwf_0829: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| thiD |
|
|
|
Gene: PsycPRwf_0828: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
| CRON 2. | |||||
| thiC |
*
Acinetobacter sp. ADP1 Site: position = -215 score = 69.07 sequence = TGCATGCTTGACGGA... Gene: ACIAD0276: Thiamine biosynthesis protein ThiC |
*
Acinetobacter baumannii AB0057 Site: position = -225 score = 62.38 sequence = AAATCGCTTGACGGA... Gene: AB57_0340: Thiamine biosynthesis protein ThiC |
*
Psychrobacter arcticum 273-4 Site: position = -364 score = 61.21 sequence = ACTGACAGACTCGGG... Gene: Psyc_0086: Thiamine biosynthesis protein ThiC |
*
Psychrobacter sp. PRwf-1 Site: position = -426 score = 61.49 sequence = ATTAAGACTCGGGGT... Gene: PsycPRwf_2272: Thiamine biosynthesis protein ThiC |
Thiamine biosynthesis protein ThiC |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |