Regulog TPP - Psychromonadaceae/Aeromonadales

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Phylum:	Proteobacteria/Gamma

Member of regulog collections

By taxonomy - Psychromonadaceae/Aeromonadales
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Psychromonas ingrahamii 37	14	3
Psychromonas sp. CNPT3	12	2
Moritella sp. PE36	14	3
Aeromonas hydrophila subsp. hydrophila ATCC 7966	9	2
Aeromonas salmonicida subsp. salmonicida A449	9	2
Tolumonas auensis DSM 9187	9	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
thiD	* Psychromonas ingrahamii 37 Site: position = -173 score = 88.77 sequence = GCAAATATAGTCGGG... Gene: Ping_2378: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	* Psychromonas sp. CNPT3 Site: position = -169 score = 73.56 sequence = TTCGATAGTCGGGGG... Gene: PCNPT3_06913: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	* Moritella sp. PE36 Site: position = -177 score = 83.77 sequence = TTATATAGTCGGGGG... Gene: PE36_01105: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187 Gene: Tola_0217: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Phosphomethylpyrimidine kinase (EC 2.7.4.7)
thiZ	Psychromonas ingrahamii 37 Gene: Ping_2377: Hydroxymethylpyrimidine ABC transporter, ATPase component	Psychromonas sp. CNPT3 Gene: PCNPT3_06918: Hydroxymethylpyrimidine ABC transporter, ATPase component	Moritella sp. PE36 Gene: PE36_01110: Hydroxymethylpyrimidine ABC transporter, ATPase component	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Hydroxymethylpyrimidine ABC transporter, ATPase component
thiX	Psychromonas ingrahamii 37 Gene: Ping_2376: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Psychromonas sp. CNPT3 Gene: PCNPT3_06923: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Moritella sp. PE36 Gene: PE36_01115: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Hydroxymethylpyrimidine ABC transporter, transmembrane component
thiY	Psychromonas ingrahamii 37 Gene: Ping_2375: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Psychromonas sp. CNPT3 Gene: PCNPT3_06928: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Moritella sp. PE36 Gene: PE36_01120: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Hydroxymethylpyrimidine ABC transporter, substrate-binding component
tenA	Psychromonas ingrahamii 37 Gene: Ping_2374: Thiaminase II (EC 3.5.99.2)	Psychromonas sp. CNPT3 Gene: PCNPT3_06933: Thiaminase II (EC 3.5.99.2)	Moritella sp. PE36 Gene: PE36_01125: Thiaminase II (EC 3.5.99.2)	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Thiaminase II (EC 3.5.99.2)
thiM	Psychromonas ingrahamii 37 Gene: Ping_2373: Hydroxyethylthiazole kinase (EC 2.7.1.50)	Psychromonas sp. CNPT3 Gene: PCNPT3_06938: Hydroxyethylthiazole kinase (EC 2.7.1.50)	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	* Tolumonas auensis DSM 9187 Site: position = -142 score = 64.05 sequence = TTAACCGTGACCGGG... Gene: Tola_0219: Hydroxyethylthiazole kinase (EC 2.7.1.50)	Hydroxyethylthiazole kinase (EC 2.7.1.50)
thiE	Psychromonas ingrahamii 37 Gene: Ping_2372: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187 Gene: Tola_0218: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)

CRON 2.
thiB	* Psychromonas ingrahamii 37 Site: position = -137 score = 64.24 sequence = CTTTCTCAACGGGGT... Gene: Ping_0385: Thiamin ABC transporter, substrate-binding component	Psychromonas sp. CNPT3 Gene: PCNPT3_07395: Thiamin ABC transporter, substrate-binding component	* Moritella sp. PE36 Site: position = -151 score = 46.73 sequence = CTCACTCATCGGGGT... Gene: PE36_22360: Thiamin ABC transporter, substrate-binding component	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -143 score = 64.12 sequence = CGTTTCTCAAACGGG... Gene: AHA_0876: Thiamin ABC transporter, substrate-binding component	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -195 score = 64.12 sequence = TTTCTCAAACGGGGT... Gene: ASA_3415: Thiamin ABC transporter, substrate-binding component	Tolumonas auensis DSM 9187 Gene: Tola_0670: Thiamin ABC transporter, substrate-binding component	Thiamin ABC transporter, substrate-binding component
thiP	Psychromonas ingrahamii 37 Gene: Ping_0386: Thiamin ABC transporter, transmembrane component	Psychromonas sp. CNPT3 Gene: PCNPT3_07400: Thiamin ABC transporter, transmembrane component	Moritella sp. PE36 Gene: PE36_22365: Thiamin ABC transporter, transmembrane component	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_0875: Thiamin ABC transporter, transmembrane component	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3416: Thiamin ABC transporter, transmembrane component	Tolumonas auensis DSM 9187 Gene: Tola_0669: Thiamin ABC transporter, transmembrane component	Thiamin ABC transporter, transmembrane component
thiQ	Psychromonas ingrahamii 37 Gene: Ping_0387: Thiamin ABC transporter, ATPase component	Psychromonas sp. CNPT3 Gene: PCNPT3_07405: Thiamin ABC transporter, ATPase component	Moritella sp. PE36 Gene: PE36_22370: Thiamin ABC transporter, ATPase component	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_0874: Thiamin ABC transporter, ATPase component	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3417: Thiamin ABC transporter, ATPase component	Tolumonas auensis DSM 9187 Gene: Tola_0668: Thiamin ABC transporter, ATPase component	Thiamin ABC transporter, ATPase component

CRON 3.
thiC	* Psychromonas ingrahamii 37 Site: position = -221 score = 60.0 sequence = GGCTCTTGTCGGAGC... Gene: Ping_0360: Thiamin biosynthesis protein ThiC	* Psychromonas sp. CNPT3 Site: position = -181 score = 71.33 sequence = GCACTTCTTGTCGGA... Gene: PCNPT3_13027: Thiamin biosynthesis protein ThiC	* Moritella sp. PE36 Site: position = -234 score = 71.58 sequence = TTGAATCTTGTCGGA... Gene: PE36_24113: Thiamin biosynthesis protein ThiC	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -396 score = 65.09 sequence = CCATCTTGTCGGAGT... Gene: AHA_0439: Thiamin biosynthesis protein ThiC	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -377 score = 60.98 sequence = CGCCATCTTGTCGGA... Gene: ASA_3905: Thiamin biosynthesis protein ThiC	* Tolumonas auensis DSM 9187 Site: position = -202 score = 72.92 sequence = TTCACTTGTCGGAGT... Gene: Tola_1074: Thiamin biosynthesis protein ThiC	Thiamin biosynthesis protein ThiC
thiDE	Psychromonas ingrahamii 37 Gene: Ping_0361: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Psychromonas sp. CNPT3 Gene: PCNPT3_13022: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Moritella sp. PE36 Gene: PE36_24108: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_0440: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3904: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Tolumonas auensis DSM 9187	Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiF	Psychromonas ingrahamii 37 Gene: Ping_0362: Sulfur carrier protein adenylyltransferase ThiF	Psychromonas sp. CNPT3 Gene: PCNPT3_13017: Sulfur carrier protein adenylyltransferase ThiF	Moritella sp. PE36 Gene: PE36_24103: Sulfur carrier protein adenylyltransferase ThiF	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_0441: Sulfur carrier protein adenylyltransferase ThiF	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3903: Sulfur carrier protein adenylyltransferase ThiF	Tolumonas auensis DSM 9187 Gene: Tola_1076: Sulfur carrier protein adenylyltransferase ThiF	Sulfur carrier protein adenylyltransferase ThiF
thiS	Psychromonas ingrahamii 37 Gene: Ping_0363: Sulfur carrier protein ThiS	Psychromonas sp. CNPT3 Gene: PCNPT3_13012: Sulfur carrier protein ThiS	Moritella sp. PE36 Gene: PE36_24098: Sulfur carrier protein ThiS	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_0442: Sulfur carrier protein ThiS	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3902: Sulfur carrier protein ThiS	Tolumonas auensis DSM 9187 Gene: Tola_1077: Sulfur carrier protein ThiS	Sulfur carrier protein ThiS
thiG	Psychromonas ingrahamii 37 Gene: Ping_0364: Thiazole biosynthesis protein ThiG	Psychromonas sp. CNPT3 Gene: PCNPT3_13007: Thiazole biosynthesis protein ThiG	Moritella sp. PE36 Gene: PE36_24093: Thiazole biosynthesis protein ThiG	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_0443: Thiazole biosynthesis protein ThiG	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3901: Thiazole biosynthesis protein ThiG	Tolumonas auensis DSM 9187 Gene: Tola_1078: Thiazole biosynthesis protein ThiG	Thiazole biosynthesis protein ThiG
thiH	Psychromonas ingrahamii 37 Gene: Ping_0365: Thiazole biosynthesis protein ThiH	Psychromonas sp. CNPT3 Gene: PCNPT3_13002: Thiazole biosynthesis protein ThiH	Moritella sp. PE36 Gene: PE36_24088: Thiazole biosynthesis protein ThiH	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_0444: Thiazole biosynthesis protein ThiH	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3900: Thiazole biosynthesis protein ThiH	Tolumonas auensis DSM 9187 Gene: Tola_1079: Thiazole biosynthesis protein ThiH	Thiazole biosynthesis protein ThiH
thiE	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187 Gene: Tola_1075: thiamine-phosphate pyrophosphorylase	thiamine-phosphate pyrophosphorylase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TPP - Psychromonadaceae/Aeromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --