Regulog TPP - Psychromonadaceae/Aeromonadales
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria/Gamma |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | 14 | 3 |
| Psychromonas sp. CNPT3 | 12 | 2 |
| Moritella sp. PE36 | 14 | 3 |
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | 9 | 2 |
| Aeromonas salmonicida subsp. salmonicida A449 | 9 | 2 |
| Tolumonas auensis DSM 9187 | 9 | 2 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| thiD |
*
Psychromonas ingrahamii 37 Site: position = -173 score = 88.77 sequence = GCAAATATAGTCGGG... Gene: Ping_2378: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Psychromonas sp. CNPT3 Site: position = -169 score = 73.56 sequence = TTCGATAGTCGGGGG... Gene: PCNPT3_06913: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Moritella sp. PE36 Site: position = -177 score = 83.77 sequence = TTATATAGTCGGGGG... Gene: PE36_01105: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
|
|
Gene: Tola_0217: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
| thiZ |
Gene: Ping_2377: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: PCNPT3_06918: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: PE36_01110: Hydroxymethylpyrimidine ABC transporter, ATPase component |
|
|
|
Hydroxymethylpyrimidine ABC transporter, ATPase component |
| thiX |
Gene: Ping_2376: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: PCNPT3_06923: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: PE36_01115: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
|
|
|
Hydroxymethylpyrimidine ABC transporter, transmembrane component |
| thiY |
Gene: Ping_2375: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: PCNPT3_06928: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: PE36_01120: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
|
|
|
Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
| tenA |
Gene: Ping_2374: Thiaminase II (EC 3.5.99.2) |
Gene: PCNPT3_06933: Thiaminase II (EC 3.5.99.2) |
Gene: PE36_01125: Thiaminase II (EC 3.5.99.2) |
|
|
|
Thiaminase II (EC 3.5.99.2) |
| thiM |
Gene: Ping_2373: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: PCNPT3_06938: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
|
|
|
*
Tolumonas auensis DSM 9187 Site: position = -142 score = 64.05 sequence = TTAACCGTGACCGGG... Gene: Tola_0219: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Hydroxyethylthiazole kinase (EC 2.7.1.50) |
| thiE |
Gene: Ping_2372: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
|
|
|
|
Gene: Tola_0218: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| CRON 2. | |||||||
| thiB |
*
Psychromonas ingrahamii 37 Site: position = -137 score = 64.24 sequence = CTTTCTCAACGGGGT... Gene: Ping_0385: Thiamin ABC transporter, substrate-binding component |
Gene: PCNPT3_07395: Thiamin ABC transporter, substrate-binding component |
*
Moritella sp. PE36 Site: position = -151 score = 46.73 sequence = CTCACTCATCGGGGT... Gene: PE36_22360: Thiamin ABC transporter, substrate-binding component |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -143 score = 64.12 sequence = CGTTTCTCAAACGGG... Gene: AHA_0876: Thiamin ABC transporter, substrate-binding component |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -195 score = 64.12 sequence = TTTCTCAAACGGGGT... Gene: ASA_3415: Thiamin ABC transporter, substrate-binding component |
Gene: Tola_0670: Thiamin ABC transporter, substrate-binding component |
Thiamin ABC transporter, substrate-binding component |
| thiP |
Gene: Ping_0386: Thiamin ABC transporter, transmembrane component |
Gene: PCNPT3_07400: Thiamin ABC transporter, transmembrane component |
Gene: PE36_22365: Thiamin ABC transporter, transmembrane component |
Gene: AHA_0875: Thiamin ABC transporter, transmembrane component |
Gene: ASA_3416: Thiamin ABC transporter, transmembrane component |
Gene: Tola_0669: Thiamin ABC transporter, transmembrane component |
Thiamin ABC transporter, transmembrane component |
| thiQ |
Gene: Ping_0387: Thiamin ABC transporter, ATPase component |
Gene: PCNPT3_07405: Thiamin ABC transporter, ATPase component |
Gene: PE36_22370: Thiamin ABC transporter, ATPase component |
Gene: AHA_0874: Thiamin ABC transporter, ATPase component |
Gene: ASA_3417: Thiamin ABC transporter, ATPase component |
Gene: Tola_0668: Thiamin ABC transporter, ATPase component |
Thiamin ABC transporter, ATPase component |
| CRON 3. | |||||||
| thiC |
*
Psychromonas ingrahamii 37 Site: position = -221 score = 60.0 sequence = GGCTCTTGTCGGAGC... Gene: Ping_0360: Thiamin biosynthesis protein ThiC |
*
Psychromonas sp. CNPT3 Site: position = -181 score = 71.33 sequence = GCACTTCTTGTCGGA... Gene: PCNPT3_13027: Thiamin biosynthesis protein ThiC |
*
Moritella sp. PE36 Site: position = -234 score = 71.58 sequence = TTGAATCTTGTCGGA... Gene: PE36_24113: Thiamin biosynthesis protein ThiC |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -396 score = 65.09 sequence = CCATCTTGTCGGAGT... Gene: AHA_0439: Thiamin biosynthesis protein ThiC |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -377 score = 60.98 sequence = CGCCATCTTGTCGGA... Gene: ASA_3905: Thiamin biosynthesis protein ThiC |
*
Tolumonas auensis DSM 9187 Site: position = -202 score = 72.92 sequence = TTCACTTGTCGGAGT... Gene: Tola_1074: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
| thiDE |
Gene: Ping_0361: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: PCNPT3_13022: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: PE36_24108: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: AHA_0440: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: ASA_3904: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
|
Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| thiF |
Gene: Ping_0362: Sulfur carrier protein adenylyltransferase ThiF |
Gene: PCNPT3_13017: Sulfur carrier protein adenylyltransferase ThiF |
Gene: PE36_24103: Sulfur carrier protein adenylyltransferase ThiF |
Gene: AHA_0441: Sulfur carrier protein adenylyltransferase ThiF |
Gene: ASA_3903: Sulfur carrier protein adenylyltransferase ThiF |
Gene: Tola_1076: Sulfur carrier protein adenylyltransferase ThiF |
Sulfur carrier protein adenylyltransferase ThiF |
| thiS |
Gene: Ping_0363: Sulfur carrier protein ThiS |
Gene: PCNPT3_13012: Sulfur carrier protein ThiS |
Gene: PE36_24098: Sulfur carrier protein ThiS |
Gene: AHA_0442: Sulfur carrier protein ThiS |
Gene: ASA_3902: Sulfur carrier protein ThiS |
Gene: Tola_1077: Sulfur carrier protein ThiS |
Sulfur carrier protein ThiS |
| thiG |
Gene: Ping_0364: Thiazole biosynthesis protein ThiG |
Gene: PCNPT3_13007: Thiazole biosynthesis protein ThiG |
Gene: PE36_24093: Thiazole biosynthesis protein ThiG |
Gene: AHA_0443: Thiazole biosynthesis protein ThiG |
Gene: ASA_3901: Thiazole biosynthesis protein ThiG |
Gene: Tola_1078: Thiazole biosynthesis protein ThiG |
Thiazole biosynthesis protein ThiG |
| thiH |
Gene: Ping_0365: Thiazole biosynthesis protein ThiH |
Gene: PCNPT3_13002: Thiazole biosynthesis protein ThiH |
Gene: PE36_24088: Thiazole biosynthesis protein ThiH |
Gene: AHA_0444: Thiazole biosynthesis protein ThiH |
Gene: ASA_3900: Thiazole biosynthesis protein ThiH |
Gene: Tola_1079: Thiazole biosynthesis protein ThiH |
Thiazole biosynthesis protein ThiH |
| thiE |
|
|
|
|
|
Gene: Tola_1075: thiamine-phosphate pyrophosphorylase |
thiamine-phosphate pyrophosphorylase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |