Regulog LexA - Clostridia-1
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Clostridium acetobutylicum ATCC 824 | 4 | 3 |
| Clostridium beijerincki NCIMB 8052 | 7 | 5 |
| Clostridium botulinum A str. ATCC 3502 | 2 | 2 |
| Clostridium butyricum 5521 | 5 | 4 |
| Clostridium kluyveri DSM 555 | 2 | 2 |
| Clostridium novyi NT | 4 | 3 |
| Clostridium perfringens ATCC 13124 | 5 | 4 |
| Clostridium tetani E88 | 2 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| recA |
*
Clostridium acetobutylicum ATCC 824 Site: position = -48 score = 5.24985 sequence = TAGAACAAATGTTCGA Gene: CAC1815: Recombination protein A |
*
Clostridium beijerincki NCIMB 8052 Site: position = -38 score = 5.10156 sequence = TAGAACATAAGTTCGA Gene: Cbei_1216: Recombination protein A |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -38 score = 5.12331 sequence = AAGAACATAAGTTCGG Gene: CBO2405: Recombination protein A |
*
Clostridium butyricum 5521 Site: position = -34 score = 5.10156 sequence = TAGAACATAAGTTCGA Gene: CBY_0292: Recombination protein A |
*
Clostridium kluyveri DSM 555 Site: position = -36 score = 5.2656 sequence = TAGAACATATGTTCTT Gene: CKL_1445: Recombination protein A |
*
Clostridium novyi NT Site: position = -49 score = 4.92667 sequence = TAGAACAAACGTTCGG Gene: NT01CX_2123: Recombination protein A |
*
Clostridium perfringens ATCC 13124 Site: position = -35 score = 5.04817 sequence = TAGAACTTATGTTCGG Gene: CPF_1927: Recombination protein A |
*
Clostridium tetani E88 Site: position = -54 score = 4.99145 sequence = TAGAACAGATGTTCGA Gene: CTC01289: Recombination protein A |
Recombination protein A |
| CRON 2. | |||||||||
| Cbei_0030 |
|
*
Clostridium beijerincki NCIMB 8052 Site: position = -61 score = 4.67324 sequence = GTGAACATATGTTCTG Site: position = -32 score = 4.84166 sequence = ATGAACATATGTTTGC Gene: Cbei_0030: hypothetical protein |
|
*
Clostridium butyricum 5521 Site: position = -33 score = 4.84166 sequence = ATGAACATATGTTTGC Gene: CBY_2287: hypothetical protein |
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|
*
Clostridium perfringens ATCC 13124 Site: position = -131 score = 5.06757 sequence = GCGAACATATGTTTTA Gene: CPF_2895: hypothetical protein |
|
hypothetical protein |
| CRON 3. | |||||||||
| lexA |
*
Clostridium acetobutylicum ATCC 824 Site: position = -84 score = 4.71571 sequence = CAGAACATAAGTTTGC Gene: CAC1832: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Clostridium beijerincki NCIMB 8052 Site: position = -68 score = 4.28403 sequence = TAGAACACAAGTTTGC Gene: Cbei_2561: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -71 score = 4.31785 sequence = TTGAACATTAGTTTGC Gene: CBO1795: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Clostridium butyricum 5521 Site: position = -68 score = 4.37669 sequence = CAGAACATAGGTTTGC Gene: CBY_0192: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Clostridium kluyveri DSM 555 Site: position = -72 score = 4.7691 sequence = TAGAACATAAGTTTGC Gene: CKL_1579: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Clostridium novyi NT Site: position = -296 score = 4.77325 sequence = TCGAAAATTTGTTCTA Site: position = -70 score = 4.78169 sequence = TAGAACATTAGTTTGA Gene: NT01CX_2111: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Clostridium perfringens ATCC 13124 Site: position = -71 score = 4.60632 sequence = GAGAACATAAGTTTGC Gene: CPF_1364: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Clostridium tetani E88 Site: position = -80 score = 4.93188 sequence = TAGAACATAAGTTTGA Gene: CTC01298: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
| CRON 4. | |||||||||
| uvrB |
*
Clostridium acetobutylicum ATCC 824 Site: position = -29 score = 5.36488 sequence = ACGAACAAATGTTTGA Gene: CAC0502: Excinuclease ABC subunit B |
*
Clostridium beijerincki NCIMB 8052 Site: position = -31 score = 4.26698 sequence = ACGAATGTCTGTTCGG Gene: Cbei_4864: Excinuclease ABC subunit B |
Gene: CBO3387: Excinuclease ABC subunit B |
*
Clostridium butyricum 5521 Site: position = -44 score = 4.57876 sequence = ACGAATGTTTGTTCGA Gene: CBY_1843: Excinuclease ABC subunit B |
Gene: CKL_3572: Excinuclease ABC subunit B |
*
Clostridium novyi NT Site: position = -29 score = 4.88949 sequence = ATGAACAAATGTTCTT Gene: NT01CX_1274: Excinuclease ABC subunit B |
|
Gene: CTC02504: Excinuclease ABC subunit B |
Excinuclease ABC subunit B |
| uvrA |
Gene: CAC0503: Excinuclease ABC subunit A |
Gene: Cbei_4863: Excinuclease ABC subunit A |
Gene: CBO3386: Excinuclease ABC subunit A |
Gene: CBY_1842: Excinuclease ABC subunit A |
Gene: CKL_3571: Excinuclease ABC subunit A |
Gene: NT01CX_1275: Excinuclease ABC subunit A |
Gene: CPF_0337: Excinuclease ABC subunit A |
Gene: CTC02503: Excinuclease ABC subunit A |
Excinuclease ABC subunit A |
| CRON 5. | |||||||||
| PF06114 |
|
*
Clostridium beijerincki NCIMB 8052 Site: position = -65 score = 4.69476 sequence = TTGAACATACGTTCTT Gene: Cbei_0879: Protein of unknown function DUF955 |
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*
Clostridium perfringens ATCC 13124 Site: position = -76 score = 5.47517 sequence = AAGAACATATGTTCGA Gene: CPF_1607: Protein of unknown function DUF955 |
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Protein of unknown function DUF955 |
| CPF_1608 |
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Gene: CPF_1608: putative resolvase |
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putative resolvase |
| Cbei_0878 |
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Gene: Cbei_0878: Cassette chromosome recombinase B |
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Cassette chromosome recombinase B |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |