Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SAM-SAH - Rhodobacterales

Properties
Regulator type: RNA regulatory element
Name: SAM-SAH
RFAM: RF01727
Regulation mode:
Biological process: Methionine metabolism
Effector: S-adenosylmethionine; S-adenosylhomocysteine
Phylum: Alphaproteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Hyphomonas neptunium ATCC 15444
Jannaschia sp. CCS1 1 1
Loktanella vestfoldensis SKA53 1 1
Oceanicaulis alexandrii HTCC2633
Oceanicola batsensis HTCC2597 1 1
Oceanicola granulosus HTCC2516 1 1
Paracoccus denitrificans PD1222 1 1
Rhodobacter sphaeroides 2.4.1 1 1
Rhodobacterales bacterium HTCC2654 1 1
Roseobacter sp. MED193 1 1
Roseovarius nubinhibens ISM 1 1
Roseovarius sp. 217 1 1
Silicibacter TM1040 1 1
Silicibacter pomeroyi DSS-3 1 1
Sulfitobacter sp. EE-36 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metK
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_0786: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Jannaschia sp. CCS1

Site:
position = -52
score = 59.49
sequence = CTCCTCCACAACGGC...

Gene: Jann_0706: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Loktanella vestfoldensis SKA53

Site:
position = -55
score = 58.46
sequence = TTCTGTCACAACGGC...

Gene: SKA53_01171: S-adenosylmethionine synthetase (EC 2.5.1.6)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_10239: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Oceanicola batsensis HTCC2597

Site:
position = -31
score = 46.17
sequence = CGCTGTCCCAACGGC...

Gene: OB2597_14801: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Oceanicola granulosus HTCC2516

Site:
position = -54
score = 53.91
sequence = TTCGCTGTCACAACG...

Gene: OG2516_13511: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Paracoccus denitrificans PD1222

Site:
position = -53
score = 59.97
sequence = GACCGCCACAACGGC...

Gene: Pden_1873: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -57
score = 57.46
sequence = GCAACCGTCACAACG...

Gene: RSP_3595: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Rhodobacterales bacterium HTCC2654

Site:
position = -56
score = 60.83
sequence = CCAACCGCCACAACG...

Gene: RB2654_18193: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Roseobacter sp. MED193

Site:
position = -54
score = 51.9
sequence = TCCTCTCACAACGGC...

Gene: MED193_17904: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Roseovarius nubinhibens ISM

Site:
position = -90
score = 53.16
sequence = ATCCCCGTCACAACG...

Gene: ISM_00720: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Roseovarius sp. 217

Site:
position = -52
score = 57.03
sequence = ATCCCCCACAACGGC...

Gene: ROS217_17232: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Silicibacter TM1040

Site:
position = -56
score = 61.65
sequence = TGCCGCCACAACGGC...

Gene: TM1040_0193: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Silicibacter pomeroyi DSS-3

Site:
position = -56
score = 56.46
sequence = ACCTGCCACAACGGC...

Gene: SPOA0011: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Sulfitobacter sp. EE-36

Site:
position = -53
score = 55.89
sequence = TAATCGGCCACAACG...

Gene: EE36_03448: S-adenosylmethionine synthetase (EC 2.5.1.6)
S-adenosylmethionine synthetase (EC 2.5.1.6)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise