Regulog SAM-SAH - Rhodobacterales
| Regulator type: | RNA regulatory element |
| Name: | SAM-SAH |
| RFAM: | RF01727 |
| Regulation mode: | |
| Biological process: | Methionine metabolism |
| Effector: | S-adenosylmethionine; S-adenosylhomocysteine |
| Phylum: | Alphaproteobacteria |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By RNA motif - SAM-SAH
- By effector - S-adenosylmethionine
- By effector - S-adenosylhomocysteine
- By pathway - Methionine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Hyphomonas neptunium ATCC 15444 | ||
| Jannaschia sp. CCS1 | 1 | 1 |
| Loktanella vestfoldensis SKA53 | 1 | 1 |
| Oceanicaulis alexandrii HTCC2633 | ||
| Oceanicola batsensis HTCC2597 | 1 | 1 |
| Oceanicola granulosus HTCC2516 | 1 | 1 |
| Paracoccus denitrificans PD1222 | 1 | 1 |
| Rhodobacter sphaeroides 2.4.1 | 1 | 1 |
| Rhodobacterales bacterium HTCC2654 | 1 | 1 |
| Roseobacter sp. MED193 | 1 | 1 |
| Roseovarius nubinhibens ISM | 1 | 1 |
| Roseovarius sp. 217 | 1 | 1 |
| Silicibacter TM1040 | 1 | 1 |
| Silicibacter pomeroyi DSS-3 | 1 | 1 |
| Sulfitobacter sp. EE-36 | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| metK |
Gene: HNE_0786: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Jannaschia sp. CCS1 Site: position = -52 score = 59.49 sequence = CTCCTCCACAACGGC... Gene: Jann_0706: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Loktanella vestfoldensis SKA53 Site: position = -55 score = 58.46 sequence = TTCTGTCACAACGGC... Gene: SKA53_01171: S-adenosylmethionine synthetase (EC 2.5.1.6) |
Gene: OA2633_10239: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Oceanicola batsensis HTCC2597 Site: position = -31 score = 46.17 sequence = CGCTGTCCCAACGGC... Gene: OB2597_14801: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Oceanicola granulosus HTCC2516 Site: position = -54 score = 53.91 sequence = TTCGCTGTCACAACG... Gene: OG2516_13511: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Paracoccus denitrificans PD1222 Site: position = -53 score = 59.97 sequence = GACCGCCACAACGGC... Gene: Pden_1873: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -57 score = 57.46 sequence = GCAACCGTCACAACG... Gene: RSP_3595: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Rhodobacterales bacterium HTCC2654 Site: position = -56 score = 60.83 sequence = CCAACCGCCACAACG... Gene: RB2654_18193: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Roseobacter sp. MED193 Site: position = -54 score = 51.9 sequence = TCCTCTCACAACGGC... Gene: MED193_17904: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Roseovarius nubinhibens ISM Site: position = -90 score = 53.16 sequence = ATCCCCGTCACAACG... Gene: ISM_00720: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Roseovarius sp. 217 Site: position = -52 score = 57.03 sequence = ATCCCCCACAACGGC... Gene: ROS217_17232: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Silicibacter TM1040 Site: position = -56 score = 61.65 sequence = TGCCGCCACAACGGC... Gene: TM1040_0193: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Silicibacter pomeroyi DSS-3 Site: position = -56 score = 56.46 sequence = ACCTGCCACAACGGC... Gene: SPOA0011: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Sulfitobacter sp. EE-36 Site: position = -53 score = 55.89 sequence = TAATCGGCCACAACG... Gene: EE36_03448: S-adenosylmethionine synthetase (EC 2.5.1.6) |
S-adenosylmethionine synthetase (EC 2.5.1.6) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |