Regulog SAM-Chlorobi - Chlorobiales
| Regulator type: | RNA regulatory element |
| Name: | SAM-Chlorobi |
| RFAM: | RF01724 |
| Regulation mode: | |
| Biological process: | Methionine metabolism |
| Effector: | |
| Phylum: | Chlorobi |
Member of regulog collections
- By taxonomy - Chlorobiales
- By RNA motif - SAM-Chlorobi
- By pathway - Methionine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Chlorobaculum parvum NCIB 8327 | 2 | 1 |
| Chlorobium chlorochromatii CaD3 | 2 | 1 |
| Chlorobium ferrooxidans DSM 13031 | 2 | 1 |
| Chlorobium limicola DSM 245 | 2 | 1 |
| Chlorobium phaeobacteroides BS1 | 2 | 1 |
| Chlorobium phaeobacteroides DSM 266 | 2 | 1 |
| Chloroherpeton thalassium ATCC 35110 | 2 | 1 |
| Pelodictyon luteolum DSM 273 | 2 | 1 |
| Pelodictyon phaeoclathratiforme BU-1 | 2 | 1 |
| Prosthecochloris aestuarii DSM 271 | 2 | 1 |
| Prosthecochloris vibrioformis DSM 265 | 2 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| metK |
*
Chlorobaculum parvum NCIB 8327 Site: position = -193 score = 67.48 sequence = TCGGCATCCCCATTA... Gene: Cpar_0689: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Chlorobium chlorochromatii CaD3 Site: position = -197 score = 37.61 sequence = GGCATCCCCATTACC... Gene: Cag_1547: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Chlorobium ferrooxidans DSM 13031 Site: position = -189 score = 81.13 sequence = TTGACACTCCCATTA... Gene: CferDRAFT_0054: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Chlorobium limicola DSM 245 Site: position = -189 score = 89.21 sequence = GGCATCCCCATTACC... Gene: Clim_1641: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Chlorobium phaeobacteroides BS1 Site: position = -180 score = 64.25 sequence = GGCATCCCCATTACC... Gene: Cphamn1_1640: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Chlorobium phaeobacteroides DSM 266 Site: position = -190 score = 72.23 sequence = TCGGCATCCCCATTA... Gene: Cpha266_0922: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Chloroherpeton thalassium ATCC 35110 Site: position = -186 score = 47.08 sequence = GACATCCCCATTATC... Gene: Ctha_1913: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Pelodictyon luteolum DSM 273 Site: position = -188 score = 77.82 sequence = AAGGCATCCCCATTA... Gene: Plut_0672: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Pelodictyon phaeoclathratiforme BU-1 Site: position = -209 score = 77.55 sequence = GACATCCCCATTACC... Gene: Ppha_2094: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Prosthecochloris aestuarii DSM 271 Site: position = -178 score = 68.13 sequence = CAGGCATCCCCATTA... Gene: Paes_0808: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Prosthecochloris vibrioformis DSM 265 Site: position = -190 score = 88.01 sequence = AGCATCACCATTATC... Gene: Cvib_1121: S-adenosylmethionine synthetase (EC 2.5.1.6) |
S-adenosylmethionine synthetase (EC 2.5.1.6) |
| achY |
Gene: Cpar_0688: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Cag_1548: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: CferDRAFT_0053: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Clim_1642: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Cphamn1_1641: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Cpha266_0921: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Ctha_1914: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Plut_0671: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Ppha_2095: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Paes_0807: Adenosylhomocysteinase (EC 3.3.1.1) |
Gene: Cvib_1122: Adenosylhomocysteinase (EC 3.3.1.1) |
Adenosylhomocysteinase (EC 3.3.1.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |