Regulog AlsR - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | RpiR |
| Regulation mode: | repressor |
| Biological process: | Allose utilization |
| Effector: | D-allose |
| Phylum: | Gammaproteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By TF family - RpiR
- By effector - D-allose
- By pathway - Allose utilization
| Genome | Genes | Operons |
|---|---|---|
| Citrobacter koseri ATCC BAA-895 | 8 | 2 |
| Edwardsiella tarda EIB202 | ||
| Enterobacter sp. 638 | ||
| Erwinia amylovora ATCC 49946 | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ||
| Escherichia coli str. K-12 substr. MG1655 | 7 | 2 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | ||
| Proteus mirabilis HI4320 | ||
| Salmonella typhimurium LT2 | ||
| Serratia proteamaculans 568 | ||
| Yersinia pestis KIM |
| Genes | Function | ||||||||||||
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| CRON 1. | |||||||||||||
| rpiB |
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Citrobacter koseri ATCC BAA-895 Site: position = -106 score = 4.4398 sequence = GGTGTGTAGAACAGGCC Gene: CKO_03782: D-allose-6-phosphate isomerase (EC 5.3.1.-) / Ribose 5-phosphate isomerase B (EC 5.3.1.6) |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -111 score = 5.32319 sequence = ACTCTGTAAAACAGATC Gene: b4090: D-allose-6-phosphate isomerase (EC 5.3.1.-) / Ribose 5-phosphate isomerase B (EC 5.3.1.6) |
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D-allose-6-phosphate isomerase (EC 5.3.1.-) / Ribose 5-phosphate isomerase B (EC 5.3.1.6) |
| CRON 2. | |||||||||||||
| CKO_03783 |
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Citrobacter koseri ATCC BAA-895 Site: position = -56 score = 4.4398 sequence = GGCCTGTTCTACACACC Gene: CKO_03783: hypothetical protein |
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hypothetical protein |
| alsR |
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Citrobacter koseri ATCC BAA-895 Site: position = -1 score = 4.06079 sequence = AATGAGTCAGTCAGAAT Gene: CKO_03784: Transcriptional regulator of D-allose utilization, RpiR family |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -264 score = 5.32319 sequence = GATCTGTTTTACAGAGT Gene: b4089: Transcriptional regulator of D-allose utilization, RpiR family |
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Transcriptional regulator of D-allose utilization, RpiR family |
| alsB |
Gene: CKO_03785: D-allose ABC transporter, substrate-binding component |
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Gene: b4088: D-allose ABC transporter, substrate-binding component |
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D-allose ABC transporter, substrate-binding component |
| alsA |
Gene: CKO_03786: D-allose ABC transporter, ATPase component |
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Gene: b4087: D-allose ABC transporter, ATPase component |
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D-allose ABC transporter, ATPase component |
| alsC |
Gene: CKO_03787: D-allose ABC transporter, permease component |
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Gene: b4086: D-allose ABC transporter, permease component |
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D-allose ABC transporter, permease component |
| alsE |
Gene: CKO_03788: D-allulose-6-phosphate 3-epimerase (EC 5.1.3.-) |
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Gene: b4085: D-allulose-6-phosphate 3-epimerase (EC 5.1.3.-) |
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D-allulose-6-phosphate 3-epimerase (EC 5.1.3.-) |
| alsK |
Gene: CKO_03789: D-allose kinase (EC 2.7.1.55) |
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Gene: b4084: D-allose kinase (EC 2.7.1.55) |
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D-allose kinase (EC 2.7.1.55) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |