Regulog SAH_riboswitch - Burkholderia
| Regulator type: | RNA regulatory element |
| Name: | SAH_riboswitch |
| RFAM: | RF01057 |
| Regulation mode: | |
| Biological process: | Methionine metabolism |
| Effector: | S-adenosylhomocysteine |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Burkholderia
- By RNA motif - SAH_riboswitch
- By effector - S-adenosylhomocysteine
- By pathway - Methionine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 3 | 1 |
| Burkholderia mallei ATCC 23344 | 3 | 1 |
| Burkholderia sp. 383 | 3 | 1 |
| Burkholderia cepacia AMMD | 3 | 1 |
| Burkholderia vietnamiensis G4 | 3 | 1 |
| Burkholderia glumae BGR1 | 3 | 1 |
| Burkholderia xenovorans LB400 | 3 | 1 |
| Burkholderia phymatum STM815 | 3 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| ahcY |
*
Burkholderia pseudomallei K96243 Site: position = -175 score = 46.45 sequence = CGTTTCCGAGGAGCG... Gene: BPSL3290: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Burkholderia mallei ATCC 23344 Site: position = -175 score = 46.45 sequence = CGTTTCCGAGGAGCG... Gene: BMA2842: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Burkholderia sp. 383 Site: position = -148 score = 43.8 sequence = TTTCCGAGGAGCGTT... Gene: Bcep18194_A3375: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Burkholderia cepacia AMMD Site: position = -149 score = 46.98 sequence = TTTCCGAGGAGCGTT... Gene: Bamb_0186: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Burkholderia vietnamiensis G4 Site: position = -149 score = 46.66 sequence = TTTCCGAGGAGCGTT... Gene: Bcep1808_0232: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Burkholderia glumae BGR1 Site: position = -169 score = 45.68 sequence = TTTCCGAGGAGCGTT... Gene: bglu_1g01990: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Burkholderia xenovorans LB400 Site: position = -171 score = 36.6 sequence = CGTCTTCGAGGAGCG... Gene: Bxe_A0178: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Burkholderia phymatum STM815 Site: position = -146 score = 41.6 sequence = GTCTTCGAGGAGCGT... Gene: Bphy_2918: Adenosylhomocysteinase (EC 3.3.1.1) |
Adenosylhomocysteinase (EC 3.3.1.1) |
| PF04020 |
Gene: BPSL3289: Predicted membrane protein |
Gene: BMA2841: Predicted membrane protein |
Gene: Bcep18194_A3376: Predicted membrane protein |
Gene: Bamb_0187: Predicted membrane protein |
Gene: Bcep1808_0233: Predicted membrane protein |
Gene: bglu_1g02000: Predicted membrane protein |
Gene: Bxe_A0179: Predicted membrane protein |
Gene: Bphy_2917: Predicted membrane protein |
Predicted membrane protein |
| metF |
Gene: BPSL3288: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: BMA2840: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Bcep18194_A3377: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Bamb_0188: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Bcep1808_0234: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: bglu_1g02010: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Bxe_A0180: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Bphy_2916: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |