Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SAH_riboswitch - Burkholderia

Properties
Regulator type: RNA regulatory element
Name: SAH_riboswitch
RFAM: RF01057
Regulation mode:
Biological process: Methionine metabolism
Effector: S-adenosylhomocysteine
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia pseudomallei K96243 3 1
Burkholderia mallei ATCC 23344 3 1
Burkholderia sp. 383 3 1
Burkholderia cepacia AMMD 3 1
Burkholderia vietnamiensis G4 3 1
Burkholderia glumae BGR1 3 1
Burkholderia xenovorans LB400 3 1
Burkholderia phymatum STM815 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ahcY
*
Burkholderia pseudomallei K96243

Site:
position = -175
score = 46.45
sequence = CGTTTCCGAGGAGCG...

Gene: BPSL3290: Adenosylhomocysteinase (EC 3.3.1.1)
*
Burkholderia mallei ATCC 23344

Site:
position = -175
score = 46.45
sequence = CGTTTCCGAGGAGCG...

Gene: BMA2842: Adenosylhomocysteinase (EC 3.3.1.1)
*
Burkholderia sp. 383

Site:
position = -148
score = 43.8
sequence = TTTCCGAGGAGCGTT...

Gene: Bcep18194_A3375: Adenosylhomocysteinase (EC 3.3.1.1)
*
Burkholderia cepacia AMMD

Site:
position = -149
score = 46.98
sequence = TTTCCGAGGAGCGTT...

Gene: Bamb_0186: Adenosylhomocysteinase (EC 3.3.1.1)
*
Burkholderia vietnamiensis G4

Site:
position = -149
score = 46.66
sequence = TTTCCGAGGAGCGTT...

Gene: Bcep1808_0232: Adenosylhomocysteinase (EC 3.3.1.1)
*
Burkholderia glumae BGR1

Site:
position = -169
score = 45.68
sequence = TTTCCGAGGAGCGTT...

Gene: bglu_1g01990: Adenosylhomocysteinase (EC 3.3.1.1)
*
Burkholderia xenovorans LB400

Site:
position = -171
score = 36.6
sequence = CGTCTTCGAGGAGCG...

Gene: Bxe_A0178: Adenosylhomocysteinase (EC 3.3.1.1)
*
Burkholderia phymatum STM815

Site:
position = -146
score = 41.6
sequence = GTCTTCGAGGAGCGT...

Gene: Bphy_2918: Adenosylhomocysteinase (EC 3.3.1.1)
Adenosylhomocysteinase (EC 3.3.1.1)
PF04020
 
Burkholderia pseudomallei K96243

Gene: BPSL3289: Predicted membrane protein
 
Burkholderia mallei ATCC 23344

Gene: BMA2841: Predicted membrane protein
 
Burkholderia sp. 383

Gene: Bcep18194_A3376: Predicted membrane protein
 
Burkholderia cepacia AMMD

Gene: Bamb_0187: Predicted membrane protein
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_0233: Predicted membrane protein
 
Burkholderia glumae BGR1

Gene: bglu_1g02000: Predicted membrane protein
 
Burkholderia xenovorans LB400

Gene: Bxe_A0179: Predicted membrane protein
 
Burkholderia phymatum STM815

Gene: Bphy_2917: Predicted membrane protein
Predicted membrane protein
metF
 
Burkholderia pseudomallei K96243

Gene: BPSL3288: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Burkholderia mallei ATCC 23344

Gene: BMA2840: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Burkholderia sp. 383

Gene: Bcep18194_A3377: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Burkholderia cepacia AMMD

Gene: Bamb_0188: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_0234: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Burkholderia glumae BGR1

Gene: bglu_1g02010: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Burkholderia xenovorans LB400

Gene: Bxe_A0180: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Burkholderia phymatum STM815

Gene: Bphy_2916: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD