Regulog TPP - Burkholderia
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Burkholderia
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 6 | 3 |
| Burkholderia mallei ATCC 23344 | 4 | 2 |
| Burkholderia sp. 383 | 5 | 2 |
| Burkholderia cepacia AMMD | 5 | 2 |
| Burkholderia vietnamiensis G4 | 5 | 2 |
| Burkholderia glumae BGR1 | 6 | 3 |
| Burkholderia xenovorans LB400 | 5 | 2 |
| Burkholderia phymatum STM815 | 5 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| thiO |
*
Burkholderia pseudomallei K96243 Site: position = -364 score = 50.17 sequence = GCCGACGAAACAGGG... Gene: BPSL3154: Glycine oxidase ThiO (EC 1.4.3.19) |
*
Burkholderia mallei ATCC 23344 Site: position = -358 score = 50.17 sequence = GCCGACGAAACAGGG... Gene: BMA2730: Glycine oxidase ThiO (EC 1.4.3.19) |
*
Burkholderia sp. 383 Site: position = -348 score = 62.13 sequence = CGACGAAACAGGGGT... Gene: Bcep18194_A3508: Glycine oxidase ThiO (EC 1.4.3.19) |
*
Burkholderia cepacia AMMD Site: position = -357 score = 59.14 sequence = CGACGAAACAGGGGT... Gene: Bamb_0328: Glycine oxidase ThiO (EC 1.4.3.19) |
*
Burkholderia vietnamiensis G4 Site: position = -356 score = 61.78 sequence = CGACGAAACAGGGGT... Gene: Bcep1808_0389: Glycine oxidase ThiO (EC 1.4.3.19) |
*
Burkholderia glumae BGR1 Site: position = -361 score = 59.55 sequence = AGACGAAACAGGGGT... Gene: bglu_1g03160: Glycine oxidase ThiO (EC 1.4.3.19) |
*
Burkholderia xenovorans LB400 Site: position = -342 score = 60.98 sequence = TTCGACGAAACAGGG... Gene: Bxe_A0383: Glycine oxidase ThiO (EC 1.4.3.19) |
*
Burkholderia phymatum STM815 Site: position = -343 score = 63.55 sequence = CCAGACGAAACAGGG... Gene: Bphy_2774: Glycine oxidase ThiO (EC 1.4.3.19) |
Glycine oxidase ThiO (EC 1.4.3.19) |
| thiS |
Gene: BPSL3153: Sulfur carrier protein ThiS |
Gene: BMA2729: Sulfur carrier protein ThiS |
Gene: Bcep18194_A3509: Sulfur carrier protein ThiS |
Gene: Bamb_0329: Sulfur carrier protein ThiS |
Gene: Bcep1808_0390: Sulfur carrier protein ThiS |
Gene: bglu_1g03170: Sulfur carrier protein ThiS |
Gene: Bxe_A0384: Sulfur carrier protein ThiS |
Gene: Bphy_2773: Sulfur carrier protein ThiS |
Sulfur carrier protein ThiS |
| thiG |
Gene: BPSL3152: Thiazole biosynthesis protein ThiG |
Gene: BMA2728: Thiazole biosynthesis protein ThiG |
Gene: Bcep18194_A3510: Thiazole biosynthesis protein ThiG |
Gene: Bamb_0330: Thiazole biosynthesis protein ThiG |
Gene: Bcep1808_0391: Thiazole biosynthesis protein ThiG |
Gene: bglu_1g03180: Thiazole biosynthesis protein ThiG |
Gene: Bxe_A0385: Thiazole biosynthesis protein ThiG |
Gene: Bphy_2772: Thiazole biosynthesis protein ThiG |
Thiazole biosynthesis protein ThiG |
| thiE |
Gene: BPSL3151: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: BMA2727: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Bcep18194_A3511: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Bamb_0331: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Bcep1808_0392: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: bglu_1g03190: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Bxe_A0386: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Bphy_2771: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| CRON 2. | |||||||||
| thiC |
*
Burkholderia pseudomallei K96243 Site: position = -241 score = 58.99 sequence = CTTGCTAACGCGGGG... Gene: BPSL1290: Thiamin biosynthesis protein ThiC |
*
Burkholderia mallei ATCC 23344 Site: position = -239 score = 58.99 sequence = TGCTAACGCGGGGGT... Gene: BMA3090: Thiamin biosynthesis protein ThiC |
*
Burkholderia sp. 383 Site: position = -242 score = 59.11 sequence = CCTGCTAACGCGGGG... Gene: Bcep18194_A4331: Thiamin biosynthesis protein ThiC |
*
Burkholderia cepacia AMMD Site: position = -242 score = 59.38 sequence = CTTGCTAACGCGGGG... Gene: Bamb_1105: Thiamin biosynthesis protein ThiC |
*
Burkholderia vietnamiensis G4 Site: position = -242 score = 58.98 sequence = GCTGCTAACGCGGGG... Gene: Bcep1808_1132: Thiamin biosynthesis protein ThiC |
*
Burkholderia glumae BGR1 Site: position = -192 score = 56.71 sequence = CTAGCTAACGCGGGG... Gene: bglu_1g10430: Thiamin biosynthesis protein ThiC |
*
Burkholderia xenovorans LB400 Site: position = -211 score = 55.99 sequence = TGCTAACGCGGGGGT... Gene: Bxe_A1449: Thiamin biosynthesis protein ThiC |
*
Burkholderia phymatum STM815 Site: position = -231 score = 51.32 sequence = TGCTAACGCGGGGGT... Gene: Bphy_1518: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
| CRON 3. | |||||||||
| emrE |
*
Burkholderia pseudomallei K96243 Site: position = -175 score = 61.02 sequence = CCCGGCCATCAGGGG... Gene: BPSS1111: Multidrug resistance efflux transporter EmrE |
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|
|
*
Burkholderia glumae BGR1 Site: position = -187 score = 58.0 sequence = AGCGGCCATCAGGGG... Gene: bglu_2g17570: Multidrug resistance efflux transporter EmrE |
|
|
Multidrug resistance efflux transporter EmrE |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |