Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TPP - Burkholderia

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia pseudomallei K96243 6 3
Burkholderia mallei ATCC 23344 4 2
Burkholderia sp. 383 5 2
Burkholderia cepacia AMMD 5 2
Burkholderia vietnamiensis G4 5 2
Burkholderia glumae BGR1 6 3
Burkholderia xenovorans LB400 5 2
Burkholderia phymatum STM815 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thiO
*
Burkholderia pseudomallei K96243

Site:
position = -364
score = 50.17
sequence = GCCGACGAAACAGGG...

Gene: BPSL3154: Glycine oxidase ThiO (EC 1.4.3.19)
*
Burkholderia mallei ATCC 23344

Site:
position = -358
score = 50.17
sequence = GCCGACGAAACAGGG...

Gene: BMA2730: Glycine oxidase ThiO (EC 1.4.3.19)
*
Burkholderia sp. 383

Site:
position = -348
score = 62.13
sequence = CGACGAAACAGGGGT...

Gene: Bcep18194_A3508: Glycine oxidase ThiO (EC 1.4.3.19)
*
Burkholderia cepacia AMMD

Site:
position = -357
score = 59.14
sequence = CGACGAAACAGGGGT...

Gene: Bamb_0328: Glycine oxidase ThiO (EC 1.4.3.19)
*
Burkholderia vietnamiensis G4

Site:
position = -356
score = 61.78
sequence = CGACGAAACAGGGGT...

Gene: Bcep1808_0389: Glycine oxidase ThiO (EC 1.4.3.19)
*
Burkholderia glumae BGR1

Site:
position = -361
score = 59.55
sequence = AGACGAAACAGGGGT...

Gene: bglu_1g03160: Glycine oxidase ThiO (EC 1.4.3.19)
*
Burkholderia xenovorans LB400

Site:
position = -342
score = 60.98
sequence = TTCGACGAAACAGGG...

Gene: Bxe_A0383: Glycine oxidase ThiO (EC 1.4.3.19)
*
Burkholderia phymatum STM815

Site:
position = -343
score = 63.55
sequence = CCAGACGAAACAGGG...

Gene: Bphy_2774: Glycine oxidase ThiO (EC 1.4.3.19)
Glycine oxidase ThiO (EC 1.4.3.19)
thiS
 
Burkholderia pseudomallei K96243

Gene: BPSL3153: Sulfur carrier protein ThiS
 
Burkholderia mallei ATCC 23344

Gene: BMA2729: Sulfur carrier protein ThiS
 
Burkholderia sp. 383

Gene: Bcep18194_A3509: Sulfur carrier protein ThiS
 
Burkholderia cepacia AMMD

Gene: Bamb_0329: Sulfur carrier protein ThiS
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_0390: Sulfur carrier protein ThiS
 
Burkholderia glumae BGR1

Gene: bglu_1g03170: Sulfur carrier protein ThiS
 
Burkholderia xenovorans LB400

Gene: Bxe_A0384: Sulfur carrier protein ThiS
 
Burkholderia phymatum STM815

Gene: Bphy_2773: Sulfur carrier protein ThiS
Sulfur carrier protein ThiS
thiG
 
Burkholderia pseudomallei K96243

Gene: BPSL3152: Thiazole biosynthesis protein ThiG
 
Burkholderia mallei ATCC 23344

Gene: BMA2728: Thiazole biosynthesis protein ThiG
 
Burkholderia sp. 383

Gene: Bcep18194_A3510: Thiazole biosynthesis protein ThiG
 
Burkholderia cepacia AMMD

Gene: Bamb_0330: Thiazole biosynthesis protein ThiG
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_0391: Thiazole biosynthesis protein ThiG
 
Burkholderia glumae BGR1

Gene: bglu_1g03180: Thiazole biosynthesis protein ThiG
 
Burkholderia xenovorans LB400

Gene: Bxe_A0385: Thiazole biosynthesis protein ThiG
 
Burkholderia phymatum STM815

Gene: Bphy_2772: Thiazole biosynthesis protein ThiG
Thiazole biosynthesis protein ThiG
thiE
 
Burkholderia pseudomallei K96243

Gene: BPSL3151: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Burkholderia mallei ATCC 23344

Gene: BMA2727: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Burkholderia sp. 383

Gene: Bcep18194_A3511: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Burkholderia cepacia AMMD

Gene: Bamb_0331: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Burkholderia vietnamiensis G4

Gene: Bcep1808_0392: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Burkholderia glumae BGR1

Gene: bglu_1g03190: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Burkholderia xenovorans LB400

Gene: Bxe_A0386: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Burkholderia phymatum STM815

Gene: Bphy_2771: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
CRON 2.
thiC
*
Burkholderia pseudomallei K96243

Site:
position = -241
score = 58.99
sequence = CTTGCTAACGCGGGG...

Gene: BPSL1290: Thiamin biosynthesis protein ThiC
*
Burkholderia mallei ATCC 23344

Site:
position = -239
score = 58.99
sequence = TGCTAACGCGGGGGT...

Gene: BMA3090: Thiamin biosynthesis protein ThiC
*
Burkholderia sp. 383

Site:
position = -242
score = 59.11
sequence = CCTGCTAACGCGGGG...

Gene: Bcep18194_A4331: Thiamin biosynthesis protein ThiC
*
Burkholderia cepacia AMMD

Site:
position = -242
score = 59.38
sequence = CTTGCTAACGCGGGG...

Gene: Bamb_1105: Thiamin biosynthesis protein ThiC
*
Burkholderia vietnamiensis G4

Site:
position = -242
score = 58.98
sequence = GCTGCTAACGCGGGG...

Gene: Bcep1808_1132: Thiamin biosynthesis protein ThiC
*
Burkholderia glumae BGR1

Site:
position = -192
score = 56.71
sequence = CTAGCTAACGCGGGG...

Gene: bglu_1g10430: Thiamin biosynthesis protein ThiC
*
Burkholderia xenovorans LB400

Site:
position = -211
score = 55.99
sequence = TGCTAACGCGGGGGT...

Gene: Bxe_A1449: Thiamin biosynthesis protein ThiC
*
Burkholderia phymatum STM815

Site:
position = -231
score = 51.32
sequence = TGCTAACGCGGGGGT...

Gene: Bphy_1518: Thiamin biosynthesis protein ThiC
Thiamin biosynthesis protein ThiC
 
CRON 3.
emrE
*
Burkholderia pseudomallei K96243

Site:
position = -175
score = 61.02
sequence = CCCGGCCATCAGGGG...

Gene: BPSS1111: Multidrug resistance efflux transporter EmrE
 
Burkholderia mallei ATCC 23344
 
Burkholderia sp. 383
 
Burkholderia cepacia AMMD
 
Burkholderia vietnamiensis G4
*
Burkholderia glumae BGR1

Site:
position = -187
score = 58.0
sequence = AGCGGCCATCAGGGG...

Gene: bglu_2g17570: Multidrug resistance efflux transporter EmrE
 
Burkholderia xenovorans LB400
 
Burkholderia phymatum STM815
Multidrug resistance efflux transporter EmrE
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD