Regulog FMN - Burkholderia
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Burkholderia
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 1 | 1 |
| Burkholderia mallei ATCC 23344 | 1 | 1 |
| Burkholderia sp. 383 | 2 | 2 |
| Burkholderia cepacia AMMD | 1 | 1 |
| Burkholderia vietnamiensis G4 | 1 | 1 |
| Burkholderia glumae BGR1 | 1 | 1 |
| Burkholderia xenovorans LB400 | 1 | 1 |
| Burkholderia phymatum STM815 | 1 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| ribB |
*
Burkholderia pseudomallei K96243 Site: position = -290 score = 95.55 sequence = TGCGTCTTCAGGGCG... Gene: BPSL0678: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Burkholderia mallei ATCC 23344 Site: position = -290 score = 93.98 sequence = TGCGTCTTCAGGGCG... Gene: BMA0230: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Burkholderia sp. 383 Site: position = -268 score = 97.44 sequence = AGTGCGTCTTCAGGG... Gene: Bcep18194_A6016: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Burkholderia cepacia AMMD Site: position = -268 score = 97.02 sequence = AGTGCGTCTTCAGGG... Gene: Bamb_2742: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Burkholderia vietnamiensis G4 Site: position = -268 score = 97.17 sequence = AGTGCGTCTTCAGGG... Gene: Bcep1808_2793: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|
*2
Burkholderia xenovorans LB400 Site: position = -270 score = 46.84 sequence = TTTGCATGGGACCGG... Gene: Bxe_A0635: 3,4-dihydroxy-2-butanone 4-phosphate synthase Gene: Bxe_C0952: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Burkholderia phymatum STM815 Site: position = -390 score = 99.56 sequence = TACGTCTTCAGGGCG... Gene: Bphy_0417: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
3,4-dihydroxy-2-butanone 4-phosphate synthase |
| CRON 2. | |||||||||
| ribH |
|
|
*
Burkholderia sp. 383 Site: position = -222 score = 103.93 sequence = AACGTTCTCGGGGCG... Gene: Bcep18194_B1525: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
|
*
Burkholderia glumae BGR1 Site: position = -229 score = 97.75 sequence = CGAACGTTCTCAGGG... Gene: bglu_2g11360: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
|
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |