Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog yybP-ykoY - Caulobacterales

Properties
Regulator type: RNA regulatory element
Name: yybP-ykoY
RFAM: RF00080
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Caulobacter crescentus CB15 1 1
Caulobacter segnis ATCC 21756 1 1
Caulobacter sp. K31 1 1
Phenylobacterium zucineum HLK1 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG2119
*
Caulobacter crescentus CB15

Site:
position = -148
score = 56.88
sequence = GCCGCCCACCTTTGG...

Gene: CC2370: Probable transmembrane protein
*
Caulobacter segnis ATCC 21756

Site:
position = -198
score = 50.66
sequence = GCGCCCCACCTTTGG...

Gene: Cseg_3164: Probable transmembrane protein
*
Caulobacter sp. K31

Site:
position = -220
score = 45.17
sequence = CCCGCTCACCTTTGG...

Gene: Caul_3626: Probable transmembrane protein
*
Phenylobacterium zucineum HLK1

Site:
position = -193
score = 33.37
sequence = GCGGGCCTTCTACGG...

Gene: PHZ_c1810: Probable transmembrane protein
Probable transmembrane protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD