Regulog Glycine - Rhodobacterales
| Regulator type: | RNA regulatory element |
| Name: | Glycine |
| RFAM: | RF00504 |
| Regulation mode: | |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By RNA motif - Glycine
- By effector - Glycine
- By pathway - Glycine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 3 | 1 |
| Paracoccus denitrificans PD1222 | 4 | 2 |
| Jannaschia sp. CCS1 | 3 | 1 |
| Rhodobacterales bacterium HTCC2654 | 5 | 1 |
| Oceanicola granulosus HTCC2516 | 1 | 1 |
| Loktanella vestfoldensis SKA53 | 1 | 1 |
| Oceanicola batsensis HTCC2597 | 5 | 1 |
| Roseovarius nubinhibens ISM | 3 | 1 |
| Roseovarius sp. 217 | 3 | 1 |
| Sulfitobacter sp. EE-36 | 3 | 1 |
| Silicibacter TM1040 | 3 | 1 |
| Silicibacter pomeroyi DSS-3 | ||
| Roseobacter sp. MED193 | 3 | 2 |
| Hyphomonas neptunium ATCC 15444 | 4 | 1 |
| Oceanicaulis alexandrii HTCC2633 | 4 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| gcvT |
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Rhodobacter sphaeroides 2.4.1 Site: position = -141 score = 35.39 sequence = TCGAAGACTCTGGAG... Site: position = -229 score = 48.94 sequence = GCCACAGGATCGGGA... Gene: RSP_2193: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Paracoccus denitrificans PD1222 Site: position = -223 score = 57.57 sequence = AGGTCGGAAATCGGG... Site: position = -130 score = 23.21 sequence = GCTCTGGAGAGAGGC... Gene: Pden_2348: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Jannaschia sp. CCS1 Site: position = -148 score = 43.93 sequence = GACATAACTCTGGAG... Site: position = -250 score = 41.34 sequence = CGCAACCGTAGGGAG... Gene: Jann_3620: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*2
Rhodobacterales bacterium HTCC2654 Site: position = -144 score = 44.05 sequence = ACGACAGCACTCTGG... Site: position = -240 score = 39.12 sequence = CCGCATCCACGTTGG... Gene: RB2654_18583: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Gene: RB2654_02149: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: OG2516_14955: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
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Oceanicola batsensis HTCC2597 Site: position = -127 score = 33.36 sequence = TCTGGAGAGTGGCGC... Site: position = -219 score = 38.46 sequence = ACATCGGACAGGGAG... Gene: OB2597_14831: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Roseovarius nubinhibens ISM Site: position = -173 score = 42.16 sequence = ATCGAGGAACTCTGG... Site: position = -257 score = 49.63 sequence = AGATATCGAAACGGG... Gene: ISM_05735: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Roseovarius sp. 217 Site: position = -268 score = 43.69 sequence = AGATCGGATAGGGAG... Site: position = -185 score = 41.68 sequence = CACGGAACTCTGGAG... Gene: ROS217_16241: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Sulfitobacter sp. EE-36 Site: position = -154 score = 48.73 sequence = CTAACAACTCTGGAG... Site: position = -239 score = 45.19 sequence = ACACCGTTACGGGAG... Gene: EE36_09003: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Silicibacter TM1040 Site: position = -191 score = 47.98 sequence = GCGTAACTACTCTGG... Site: position = -293 score = 42.56 sequence = GCCGCAGCACATGGG... Gene: TM1040_2393: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: SPOA0057: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: MED193_15002: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Hyphomonas neptunium ATCC 15444 Site: position = -150 score = 50.43 sequence = ATCAACACGCTGGAA... Site: position = -238 score = 60.61 sequence = ATTCTCTTCCGGGAG... Gene: HNE_2719: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Oceanicaulis alexandrii HTCC2633 Site: position = -177 score = 42.23 sequence = GACCTAACGCTGGAA... Site: position = -266 score = 57.35 sequence = GGTCACTTGCGGGAG... Gene: OA2633_14096: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
| gcvH |
Gene: RSP_2194: Glycine cleavage system H protein |
Gene: Pden_2347: Glycine cleavage system H protein |
Gene: Jann_3621: Glycine cleavage system H protein |
Gene: RB2654_18578: Glycine cleavage system H protein |
Gene: OG2516_14950: Glycine cleavage system H protein |
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Gene: OB2597_14836: Glycine cleavage system H protein |
Gene: ISM_05730: Glycine cleavage system H protein |
Gene: ROS217_16246: Glycine cleavage system H protein |
Gene: EE36_09008: Glycine cleavage system H protein |
Gene: TM1040_2392: Glycine cleavage system H protein |
2
Silicibacter pomeroyi DSS-3 Gene: SPOA0058: Glycine cleavage system H protein Gene: SPO0878: Glycine cleavage system H protein |
*2
Roseobacter sp. MED193 Gene: MED193_15007: Glycine cleavage system H protein Site: position = -348 score = 32.74 sequence = CCCTGTGTATATGGG... Site: position = -235 score = 42.23 sequence = CACGAAAGACTCTGG... Gene: MED193_09370: Glycine cleavage system H protein |
Gene: HNE_2720: Glycine cleavage system H protein |
Gene: OA2633_14101: Glycine cleavage system H protein |
Glycine cleavage system H protein |
| RB2654_18573 |
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Gene: RB2654_18573: Uncharacterized conserved protein |
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Gene: OB2597_14846: Uncharacterized conserved protein |
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Uncharacterized conserved protein |
| RB2654_18568 |
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Gene: RB2654_18568: Lactoylglutathione lyase and related lyases |
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Lactoylglutathione lyase and related lyases |
| gcvP |
Gene: RSP_2195: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Pden_2346: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Jann_3622: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: RB2654_18563: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: OG2516_14945: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
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Gene: OB2597_14851: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: ISM_05725: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: ROS217_16251: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: EE36_09013: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: TM1040_2391: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: SPOA0059: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
2
Roseobacter sp. MED193 Gene: MED193_15012: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Gene: MED193_09365: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
2
Hyphomonas neptunium ATCC 15444 Gene: HNE_2722: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Gene: HNE_2721: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
2
Oceanicaulis alexandrii HTCC2633 Gene: OA2633_14106: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Gene: OA2633_14111: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
| OB2597_14841 |
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Gene: OB2597_14841: glycine dehydrogenase |
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glycine dehydrogenase |
| CRON 2. | ||||||||||||||||
| dadA |
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*
Paracoccus denitrificans PD1222 Site: position = -211 score = 48.39 sequence = ACAGGAGAGTCGGGT... Site: position = -141 score = 64.27 sequence = GGACCGCCACTCTGG... Gene: Pden_0183: D-amino acid dehydrogenase small subunit (EC 1.4.99.1) |
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Oceanicola granulosus HTCC2516 Site: position = -206 score = 40.09 sequence = CGGGAGAGCGCGGAC... Site: position = -131 score = 48.53 sequence = CGCAACACTCCGAAG... Gene: OG2516_12556: D-amino acid dehydrogenase small subunit (EC 1.4.99.1) |
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Loktanella vestfoldensis SKA53 Site: position = -192 score = 56.86 sequence = CACACGCCATCCGGG... Site: position = -110 score = 55.48 sequence = GGTGCAACACGCCGA... Gene: SKA53_10389: D-amino acid dehydrogenase small subunit (EC 1.4.99.1) |
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Roseobacter sp. MED193 Site: position = -187 score = 55.37 sequence = CCAAGCTGTCACAGG... Gene: MED193_00175: D-amino acid dehydrogenase small subunit (EC 1.4.99.1) |
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D-amino acid dehydrogenase small subunit (EC 1.4.99.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |