Regulog Glycine - Rhodobacterales

Properties
Regulator type:	RNA regulatory element
Name:	Glycine
RFAM:	RF00504
Regulation mode:
Biological process:	Glycine metabolism
Effector:	Glycine
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Rhodobacterales
By RNA motif - Glycine
By effector - Glycine
By pathway - Glycine metabolism

Statistics of regulated genes
Genome	Genes	Operons
Rhodobacter sphaeroides 2.4.1	3	1
Paracoccus denitrificans PD1222	4	2
Jannaschia sp. CCS1	3	1
Rhodobacterales bacterium HTCC2654	5	1
Oceanicola granulosus HTCC2516	1	1
Loktanella vestfoldensis SKA53	1	1
Oceanicola batsensis HTCC2597	5	1
Roseovarius nubinhibens ISM	3	1
Roseovarius sp. 217	3	1
Sulfitobacter sp. EE-36	3	1
Silicibacter TM1040	3	1
Silicibacter pomeroyi DSS-3
Roseobacter sp. MED193	3	2
Hyphomonas neptunium ATCC 15444	4	1
Oceanicaulis alexandrii HTCC2633	4	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
gcvT	* Rhodobacter sphaeroides 2.4.1 Site: position = -141 score = 35.39 sequence = TCGAAGACTCTGGAG... Site: position = -229 score = 48.94 sequence = GCCACAGGATCGGGA... Gene: RSP_2193: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Paracoccus denitrificans PD1222 Site: position = -223 score = 57.57 sequence = AGGTCGGAAATCGGG... Site: position = -130 score = 23.21 sequence = GCTCTGGAGAGAGGC... Gene: Pden_2348: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Jannaschia sp. CCS1 Site: position = -148 score = 43.93 sequence = GACATAACTCTGGAG... Site: position = -250 score = 41.34 sequence = CGCAACCGTAGGGAG... Gene: Jann_3620: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	2 Rhodobacterales bacterium HTCC2654* Site: position = -144 score = 44.05 sequence = ACGACAGCACTCTGG... Site: position = -240 score = 39.12 sequence = CCGCATCCACGTTGG... Gene: RB2654_18583: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Gene: RB2654_02149: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Oceanicola granulosus HTCC2516 Gene: OG2516_14955: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Loktanella vestfoldensis SKA53	* Oceanicola batsensis HTCC2597 Site: position = -127 score = 33.36 sequence = TCTGGAGAGTGGCGC... Site: position = -219 score = 38.46 sequence = ACATCGGACAGGGAG... Gene: OB2597_14831: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Roseovarius nubinhibens ISM Site: position = -173 score = 42.16 sequence = ATCGAGGAACTCTGG... Site: position = -257 score = 49.63 sequence = AGATATCGAAACGGG... Gene: ISM_05735: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Roseovarius sp. 217 Site: position = -268 score = 43.69 sequence = AGATCGGATAGGGAG... Site: position = -185 score = 41.68 sequence = CACGGAACTCTGGAG... Gene: ROS217_16241: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Sulfitobacter sp. EE-36 Site: position = -154 score = 48.73 sequence = CTAACAACTCTGGAG... Site: position = -239 score = 45.19 sequence = ACACCGTTACGGGAG... Gene: EE36_09003: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Silicibacter TM1040 Site: position = -191 score = 47.98 sequence = GCGTAACTACTCTGG... Site: position = -293 score = 42.56 sequence = GCCGCAGCACATGGG... Gene: TM1040_2393: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Silicibacter pomeroyi DSS-3 Gene: SPOA0057: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Roseobacter sp. MED193 Gene: MED193_15002: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Hyphomonas neptunium ATCC 15444 Site: position = -150 score = 50.43 sequence = ATCAACACGCTGGAA... Site: position = -238 score = 60.61 sequence = ATTCTCTTCCGGGAG... Gene: HNE_2719: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Oceanicaulis alexandrii HTCC2633 Site: position = -177 score = 42.23 sequence = GACCTAACGCTGGAA... Site: position = -266 score = 57.35 sequence = GGTCACTTGCGGGAG... Gene: OA2633_14096: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2194: Glycine cleavage system H protein	Paracoccus denitrificans PD1222 Gene: Pden_2347: Glycine cleavage system H protein	Jannaschia sp. CCS1 Gene: Jann_3621: Glycine cleavage system H protein	Rhodobacterales bacterium HTCC2654 Gene: RB2654_18578: Glycine cleavage system H protein	Oceanicola granulosus HTCC2516 Gene: OG2516_14950: Glycine cleavage system H protein	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597 Gene: OB2597_14836: Glycine cleavage system H protein	Roseovarius nubinhibens ISM Gene: ISM_05730: Glycine cleavage system H protein	Roseovarius sp. 217 Gene: ROS217_16246: Glycine cleavage system H protein	Sulfitobacter sp. EE-36 Gene: EE36_09008: Glycine cleavage system H protein	Silicibacter TM1040 Gene: TM1040_2392: Glycine cleavage system H protein	2 Silicibacter pomeroyi DSS-3 Gene: SPOA0058: Glycine cleavage system H protein Gene: SPO0878: Glycine cleavage system H protein	2 Roseobacter sp. MED193* Gene: MED193_15007: Glycine cleavage system H protein Site: position = -348 score = 32.74 sequence = CCCTGTGTATATGGG... Site: position = -235 score = 42.23 sequence = CACGAAAGACTCTGG... Gene: MED193_09370: Glycine cleavage system H protein	Hyphomonas neptunium ATCC 15444 Gene: HNE_2720: Glycine cleavage system H protein	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_14101: Glycine cleavage system H protein	Glycine cleavage system H protein
RB2654_18573	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_18573: Uncharacterized conserved protein	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597 Gene: OB2597_14846: Uncharacterized conserved protein	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Uncharacterized conserved protein
RB2654_18568	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654 Gene: RB2654_18568: Lactoylglutathione lyase and related lyases	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	Lactoylglutathione lyase and related lyases
gcvP	Rhodobacter sphaeroides 2.4.1 Gene: RSP_2195: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Paracoccus denitrificans PD1222 Gene: Pden_2346: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Jannaschia sp. CCS1 Gene: Jann_3622: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_18563: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Oceanicola granulosus HTCC2516 Gene: OG2516_14945: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597 Gene: OB2597_14851: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Roseovarius nubinhibens ISM Gene: ISM_05725: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Roseovarius sp. 217 Gene: ROS217_16251: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Sulfitobacter sp. EE-36 Gene: EE36_09013: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Silicibacter TM1040 Gene: TM1040_2391: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Silicibacter pomeroyi DSS-3 Gene: SPOA0059: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	2 Roseobacter sp. MED193 Gene: MED193_15012: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Gene: MED193_09365: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	2 Hyphomonas neptunium ATCC 15444 Gene: HNE_2722: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Gene: HNE_2721: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	2 Oceanicaulis alexandrii HTCC2633 Gene: OA2633_14106: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Gene: OA2633_14111: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
OB2597_14841	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597 Gene: OB2597_14841: glycine dehydrogenase	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	glycine dehydrogenase

CRON 2.
dadA	Rhodobacter sphaeroides 2.4.1	* Paracoccus denitrificans PD1222 Site: position = -211 score = 48.39 sequence = ACAGGAGAGTCGGGT... Site: position = -141 score = 64.27 sequence = GGACCGCCACTCTGG... Gene: Pden_0183: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	* Oceanicola granulosus HTCC2516 Site: position = -206 score = 40.09 sequence = CGGGAGAGCGCGGAC... Site: position = -131 score = 48.53 sequence = CGCAACACTCCGAAG... Gene: OG2516_12556: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	* Loktanella vestfoldensis SKA53 Site: position = -192 score = 56.86 sequence = CACACGCCATCCGGG... Site: position = -110 score = 55.48 sequence = GGTGCAACACGCCGA... Gene: SKA53_10389: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	* Roseobacter sp. MED193 Site: position = -187 score = 55.37 sequence = CCAAGCTGTCACAGG... Gene: MED193_00175: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633	D-amino acid dehydrogenase small subunit (EC 1.4.99.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Glycine - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --