Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog FMN - Rhodobacterales

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1
Paracoccus denitrificans PD1222 1 1
Jannaschia sp. CCS1
Rhodobacterales bacterium HTCC2654
Oceanicola granulosus HTCC2516
Loktanella vestfoldensis SKA53
Oceanicola batsensis HTCC2597
Roseovarius nubinhibens ISM 1 1
Roseovarius sp. 217
Sulfitobacter sp. EE-36 1 1
Silicibacter TM1040 2 2
Silicibacter pomeroyi DSS-3 1 1
Roseobacter sp. MED193 1 1
Hyphomonas neptunium ATCC 15444
Oceanicaulis alexandrii HTCC2633
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribH2
 
Rhodobacter sphaeroides 2.4.1
*
Paracoccus denitrificans PD1222

Site:
position = -198
score = 113.64
sequence = CGTGTTCTCGGGGCG...

Gene: Pden_4679: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
*
Roseovarius nubinhibens ISM

Site:
position = -226
score = 93.75
sequence = GCGGCACTCTCAGGG...

Gene: ISM_10606: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Roseovarius sp. 217
*
Sulfitobacter sp. EE-36

Site:
position = -240
score = 99.52
sequence = TCCCTATTCTCAGGG...

Gene: EE36_07868: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
*
Silicibacter TM1040

Site:
position = -182
score = 118.95
sequence = TTTCCATTCTCAGGG...

Gene: TM1040_3310: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
*
Silicibacter pomeroyi DSS-3

Site:
position = -231
score = 102.63
sequence = GTGTCGTTCTCAGGG...

Gene: SPO0268: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
*
Roseobacter sp. MED193

Site:
position = -292
score = 98.84
sequence = GCGCTGTTCTCAGGG...

Gene: MED193_14447: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
CRON 2.
ribN
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
*
Silicibacter TM1040

Site:
position = -224
score = 110.26
sequence = GATATTCTCAGGGCA...

Gene: TM1040_2496: Riboflavin permease, EamA family
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Riboflavin permease, EamA family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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