Regulog RcnR - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | CsoR |
| Regulation mode: | repressor |
| Biological process: | Cobalt resistance; Nickel resistance |
| Effector: | Nickel ion, (Ni2+); Cobalt ion, (Co2+) |
| Phylum: | Gammaproteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By TF family - CsoR
- By effector - Nickel ion, (Ni2+)
- By effector - Cobalt ion, (Co2+)
- By pathway - Cobalt resistance
- By pathway - Nickel resistance
| Genome | Genes | Operons |
|---|---|---|
| Citrobacter koseri ATCC BAA-895 | 2 | 2 |
| Edwardsiella tarda EIB202 | ||
| Enterobacter sp. 638 | ||
| Erwinia amylovora ATCC 49946 | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ||
| Escherichia coli str. K-12 substr. MG1655 | 2 | 2 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 2 | 2 |
| Photorhabdus luminescens subsp. laumondii TTO1 | ||
| Proteus mirabilis HI4320 | ||
| Salmonella typhimurium LT2 | 2 | 2 |
| Serratia proteamaculans 568 | ||
| Yersinia pestis KIM |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| rcnR |
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Citrobacter koseri ATCC BAA-895 Site: position = -64 score = 5.22404 sequence = TACTACCCCCCAGTA Site: position = -84 score = 5.39716 sequence = TACTCCCCCCCAGTA Gene: CKO_04229: Cobalt and nickel resistance transcriptional regulator RcnR |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -83 score = 5.39716 sequence = TACTCCCCCCCAGTA Site: position = -63 score = 5.22404 sequence = TACTACCCCCCAGTA Gene: b2105: Cobalt and nickel resistance transcriptional regulator RcnR |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -40 score = 5.22404 sequence = TACTACCCCCCAGTA Site: position = -61 score = 5.39716 sequence = TACTCCCCCCCAGTA Gene: KPN_00424: Cobalt and nickel resistance transcriptional regulator RcnR |
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Salmonella typhimurium LT2 Site: position = -64 score = 5.22404 sequence = TACTACCCCCCAGTA Site: position = -84 score = 5.39716 sequence = TACTCCCCCCCAGTA Gene: STM3023: Cobalt and nickel resistance transcriptional regulator RcnR |
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Cobalt and nickel resistance transcriptional regulator RcnR |
| CRON 2. | |||||||||||||
| rcnA |
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Citrobacter koseri ATCC BAA-895 Site: position = 22 score = 5.22404 sequence = TACTGGGGGGTAGTA Site: position = 42 score = 5.39716 sequence = TACTGGGGGGGAGTA Gene: CKO_04230: Nickel/cobalt efflux transporter RcnA |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -72 score = 5.22404 sequence = TACTGGGGGGTAGTA Site: position = -52 score = 5.39716 sequence = TACTGGGGGGGAGTA Gene: b2106: Nickel/cobalt efflux transporter RcnA |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -67 score = 5.22404 sequence = TACTGGGGGGTAGTA Site: position = -46 score = 5.39716 sequence = TACTGGGGGGGAGTA Gene: KPN_00423: Nickel/cobalt efflux transporter RcnA |
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Salmonella typhimurium LT2 Site: position = -72 score = 5.22404 sequence = TACTGGGGGGTAGTA Site: position = -52 score = 5.39716 sequence = TACTGGGGGGGAGTA Gene: STM3024: Nickel/cobalt efflux transporter RcnA |
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Nickel/cobalt efflux transporter RcnA |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |