Regulog YrkD - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	CsoR
Regulation mode:	repressor
Biological process:	Multidrug resistance
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 39 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - CsoR
By pathway - Multidrug resistance

Statistics of regulated genes
Genome	Genes	Operons
Anoxybacillus flavithermus WK1	19	9
Bacillus amyloliquefaciens FZB42	7	2
Bacillus cereus ATCC 14579	9	5
Bacillus clausii KSM-K16
Bacillus halodurans C-125
Bacillus licheniformis DSM 13	11	2
Bacillus pumilus SAFR-032	7	2
Bacillus subtilis subsp. subtilis str. 168	6	2
Geobacillus kaustophilus HTA426	18	7
Oceanobacillus iheyensis HTE831	6	3
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
yrkE	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -40 score = 5.1753 sequence = ATACCCCCAGGGGTAA Site: position = -104 score = 5.67858 sequence = ATACCCCTACCGGTAT Gene: RBAM_005430: Putative sulfur reduction protein	* Bacillus cereus ATCC 14579 Site: position = -32 score = 5.44663 sequence = ATACCCCTATAGGTAA Gene: BC0798: Putative sulfur reduction protein	Bacillus clausii KSM-K16	Bacillus halodurans C-125	* Bacillus licheniformis DSM 13 Site: position = -44 score = 5.87619 sequence = ATACCTGTACGGGTAT Site: position = -93 score = 5.45211 sequence = ATACCCTTTAGGGTAT Gene: BLi02794: Putative sulfur reduction protein	* Bacillus pumilus SAFR-032 Site: position = -75 score = 5.64009 sequence = ATACCCTTACCGGTAT Site: position = -35 score = 5.01996 sequence = ATACCCCCATAGGTAA Gene: BPUM_0190: Putative sulfur reduction protein	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -34 score = 5.22153 sequence = ATACCCGCAGGGGTAA Site: position = -101 score = 4.64209 sequence = ATACCCCCTATGGTAT Gene: BSU26540: Putative sulfur reduction protein	* Geobacillus kaustophilus HTA426 Site: position = -69 score = 5.49032 sequence = ATACCCATATATGTAT Gene: GK2069: Putative sulfur reduction protein	* Oceanobacillus iheyensis HTE831 Site: position = -116 score = 5.87619 sequence = ATACCTGTACGGGTAT Site: position = -45 score = 5.41997 sequence = ATACCTATGCGGGTAT Gene: OB2652: Putative sulfur reduction protein	Paenibacillus sp. JDR-2	Putative sulfur reduction protein
yrkF	Anoxybacillus flavithermus WK1 Gene: Aflv_2347: Rhodanese-like domain protein	Bacillus amyloliquefaciens FZB42 Gene: RBAM_005450: Rhodanese-like domain protein	* Bacillus cereus ATCC 14579 Site: position = -29 score = 5.82996 sequence = ATACCCCTACAGGTAT Gene: BC0793: Rhodanese-like domain protein	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi02793: Rhodanese-like domain protein	Bacillus pumilus SAFR-032 Gene: BPUM_0192: Rhodanese-like domain protein	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU26530: Rhodanese-like domain protein	Geobacillus kaustophilus HTA426 Gene: GK2066: Rhodanese-like domain protein	Oceanobacillus iheyensis HTE831 Gene: OB2651: Rhodanese-like domain protein	Paenibacillus sp. JDR-2	Rhodanese-like domain protein
yrkH	* Anoxybacillus flavithermus WK1 Site: position = -36 score = 4.8534 sequence = ATACCCTATAAGGTAT Gene: Aflv_2342: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein	Bacillus amyloliquefaciens FZB42 Gene: RBAM_005460: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein	* Bacillus cereus ATCC 14579 Site: position = -20 score = 5.01996 sequence = ATACCTATGGGGGTAA Gene: BC0794: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi02792: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein	Bacillus pumilus SAFR-032 Gene: BPUM_0193: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU26510: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein	2 Geobacillus kaustophilus HTA426* Site: position = -22 score = 4.56511 sequence = ATACATTAGGGGGTAT Gene: GK2065: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein Gene: GK2074: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein	* Oceanobacillus iheyensis HTE831 Site: position = -86 score = 4.91349 sequence = ATACGTATGGGGGTAT Gene: OB2650: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein	Paenibacillus sp. JDR-2	Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein
yrkI	Anoxybacillus flavithermus WK1 Gene: Aflv_2345: Rhodanese-like domain protein	Bacillus amyloliquefaciens FZB42 Gene: RBAM_005470: Rhodanese-like domain protein	Bacillus cereus ATCC 14579 Gene: BC0795: Rhodanese-like domain protein	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi02791: Rhodanese-like domain protein	Bacillus pumilus SAFR-032 Gene: BPUM_0194: Rhodanese-like domain protein	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU26500: Rhodanese-like domain protein	* Geobacillus kaustophilus HTA426 Site: position = -52 score = 5.61866 sequence = ATACCCATAGGGGTAA Gene: GK2070: Rhodanese-like domain protein	Oceanobacillus iheyensis HTE831 Gene: OB2649: Rhodanese-like domain protein	Paenibacillus sp. JDR-2	Rhodanese-like domain protein
yrkJ	2 Anoxybacillus flavithermus WK1 Gene: Aflv_0287: Predicted permease Gene: Aflv_2344: Predicted permease	Bacillus amyloliquefaciens FZB42 Gene: RBAM_005480: Predicted permease	Bacillus cereus ATCC 14579 Gene: BC0799: Predicted permease	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi02790: Predicted permease	Bacillus pumilus SAFR-032 Gene: BPUM_0195: Predicted permease	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU26490: Predicted permease	Geobacillus kaustophilus HTA426 Gene: GK2064: Predicted permease	Oceanobacillus iheyensis HTE831 Gene: OB2648: Predicted permease	Paenibacillus sp. JDR-2	Predicted permease
ydfQ	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi02789: Thioredoxin	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Thioredoxin
Aflv_0285	Anoxybacillus flavithermus WK1 Gene: Aflv_0285: Two component sensor histidine kinase	Bacillus amyloliquefaciens FZB42 Gene: RBAM_019780: Two component sensor histidine kinase	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi02788: Two component sensor histidine kinase	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426 Gene: GK2087: Two component sensor histidine kinase	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Two component sensor histidine kinase
yvqC	Anoxybacillus flavithermus WK1 Gene: Aflv_0286: Two component transcriptional regulator, LuxR family	Bacillus amyloliquefaciens FZB42 Gene: RBAM_019770: Two component transcriptional regulator, LuxR family	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi02787: Two component transcriptional regulator, LuxR family	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426 Gene: GK2086: Two component transcriptional regulator, LuxR family	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Two component transcriptional regulator, LuxR family
hmt2	* Anoxybacillus flavithermus WK1 Site: position = -93 score = 4.52314 sequence = AATCCCCTATGGGTAT Gene: Aflv_0282: Sulfide-quinone reductase	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579 Gene: BC3512: Sulfide-quinone reductase	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi02786: Sulfide-quinone reductase	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	* Geobacillus kaustophilus HTA426 Site: position = -91 score = 4.52314 sequence = AATCCCCTATGGGTAT Gene: GK2090: Sulfide-quinone reductase	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Sulfide-quinone reductase
Aflv_0284	Anoxybacillus flavithermus WK1 Gene: Aflv_0284: Rhodanese-like domain protein / Zn-dependent hydroxyacylglutathione hydrolase	Bacillus amyloliquefaciens FZB42 Gene: RBAM_019750: Rhodanese-like domain protein / Zn-dependent hydroxyacylglutathione hydrolase	Bacillus cereus ATCC 14579 Gene: BC3511: Rhodanese-like domain protein / Zn-dependent hydroxyacylglutathione hydrolase	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13 Gene: BLi02785: Rhodanese-like domain protein / Zn-dependent hydroxyacylglutathione hydrolase	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426 Gene: GK2088: Rhodanese-like domain protein / Zn-dependent hydroxyacylglutathione hydrolase	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Rhodanese-like domain protein / Zn-dependent hydroxyacylglutathione hydrolase
Aflv_0283	Anoxybacillus flavithermus WK1 Gene: Aflv_0283: Hypothetical protein	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426 Gene: GK2089: Hypothetical protein	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Hypothetical protein
Aflv_2282	* Anoxybacillus flavithermus WK1 Site: position = -31 score = 5.35685 sequence = ATACCCATATACGTAT Gene: Aflv_2282: Rhodanese-like domain protein	Bacillus amyloliquefaciens FZB42 Gene: RBAM_005440: Rhodanese-like domain protein	Bacillus cereus ATCC 14579 Gene: BC0796: Rhodanese-like domain protein	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032 Gene: BPUM_0191: Rhodanese-like domain protein	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426 Gene: GK2068: Rhodanese-like domain protein	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Rhodanese-like domain protein
Aflv_2348	2 Anoxybacillus flavithermus WK1* Gene: Aflv_1300: Rhodanese-like domain protein Site: position = -22 score = 5.52918 sequence = ATACCCTTATGAGTAT Site: position = -68 score = 5.04186 sequence = ATACTCATAGAGGTAA Gene: Aflv_2348: Rhodanese-like domain protein	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579 Gene: BC0797: Rhodanese-like domain protein	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426 Gene: GK2067: Rhodanese-like domain protein	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Rhodanese-like domain protein
GK2076	Anoxybacillus flavithermus WK1 Gene: Aflv_2346: NADH dehydrogenase (EC 1.6.99.3)	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	* Geobacillus kaustophilus HTA426 Site: position = -103 score = 4.88759 sequence = ATACATATACACGTAT Site: position = -97 score = 5.19308 sequence = ATACACGTATATGTAT Gene: GK2076: NADH dehydrogenase (EC 1.6.99.3)	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	NADH dehydrogenase (EC 1.6.99.3)
grx	* Anoxybacillus flavithermus WK1 Site: position = -50 score = 5.34017 sequence = ATACGTATAGGGGTAT Gene: Aflv_2343: Predicted glutaredoxin	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426 Gene: GK2075: Predicted glutaredoxin	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Predicted glutaredoxin
Aflv_0303	* Anoxybacillus flavithermus WK1 Site: position = -32 score = 4.61905 sequence = TTACACGTACTTGTAT Gene: Aflv_1299: CoA-disulfide reductase (EC 1.8.1.14) / Rhodanese domain protein	Bacillus amyloliquefaciens FZB42	* Bacillus cereus ATCC 14579 Site: position = -68 score = 5.84664 sequence = ATACCCATACAGGTAT Gene: BC0791: CoA-disulfide reductase (EC 1.8.1.14) / Rhodanese domain protein	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	* Geobacillus kaustophilus HTA426 Site: position = -98 score = 5.47363 sequence = ATACATATAGGGGTAT Gene: GK2091: CoA-disulfide reductase (EC 1.8.1.14) / Rhodanese domain protein	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	CoA-disulfide reductase (EC 1.8.1.14) / Rhodanese domain protein

CRON 2.
Aflv_1540	* Anoxybacillus flavithermus WK1 Site: position = -16 score = 5.66234 sequence = ATACACATATGGGTAT Gene: Aflv_1540: Rhodanese-like domain protein	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Rhodanese-like domain protein

CRON 3.
Aflv_1298	* Anoxybacillus flavithermus WK1 Site: position = -40 score = 5.33525 sequence = ATACCTATTAGGGTAT Gene: Aflv_1298: Rhodanese-like domain protein	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Rhodanese-like domain protein

CRON 4.
GK2072	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	* Geobacillus kaustophilus HTA426 Site: position = -56 score = 5.09067 sequence = ATACTATTAGGGGTAT Gene: GK2072: Rhodanese-like domain protein	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Rhodanese-like domain protein
yrkD	* Anoxybacillus flavithermus WK1 Site: position = -28 score = 5.20577 sequence = ATACTGATAAGGGTAT Gene: Aflv_1433: Transcriptional regulator, RcnR family	* Bacillus amyloliquefaciens FZB42 Site: position = -127 score = 5.79147 sequence = ATACCTGTAAGGGTAT Gene: RBAM_005420: Transcriptional regulator, RcnR family	* Bacillus cereus ATCC 14579 Site: position = -71 score = 5.02543 sequence = ATACCCTATAGGGTAT Gene: BC0792: Transcriptional regulator, RcnR family	Bacillus clausii KSM-K16	Bacillus halodurans C-125	* Bacillus licheniformis DSM 13 Site: position = -184 score = 5.5122 sequence = ATACGCATAGGGGTAT Gene: BLi02795: Transcriptional regulator, RcnR family	* Bacillus pumilus SAFR-032 Site: position = -46 score = 5.16718 sequence = ATACCGCTTAGGGTAT Gene: BPUM_0189: Transcriptional regulator, RcnR family	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -508 score = 5.37374 sequence = ATACCtaTggGGGTAT Gene: BSU26550: Transcriptional regulator, RcnR family	Geobacillus kaustophilus HTA426 Gene: GK2071: Transcriptional regulator, RcnR family	* Oceanobacillus iheyensis HTE831 Site: position = -62 score = 5.80041 sequence = ATACCTATAGGGGTAT Gene: OB2653: Transcriptional regulator, RcnR family	Paenibacillus sp. JDR-2	Transcriptional regulator, RcnR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YrkD - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --