Regulog YrkD - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | CsoR |
| Regulation mode: | repressor |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - CsoR
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Anoxybacillus flavithermus WK1 | 19 | 9 |
| Bacillus amyloliquefaciens FZB42 | 7 | 2 |
| Bacillus cereus ATCC 14579 | 9 | 5 |
| Bacillus clausii KSM-K16 | ||
| Bacillus halodurans C-125 | ||
| Bacillus licheniformis DSM 13 | 11 | 2 |
| Bacillus pumilus SAFR-032 | 7 | 2 |
| Bacillus subtilis subsp. subtilis str. 168 | 6 | 2 |
| Geobacillus kaustophilus HTA426 | 18 | 7 |
| Oceanobacillus iheyensis HTE831 | 6 | 3 |
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| yrkE |
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Bacillus amyloliquefaciens FZB42 Site: position = -40 score = 5.1753 sequence = ATACCCCCAGGGGTAA Site: position = -104 score = 5.67858 sequence = ATACCCCTACCGGTAT Gene: RBAM_005430: Putative sulfur reduction protein |
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Bacillus cereus ATCC 14579 Site: position = -32 score = 5.44663 sequence = ATACCCCTATAGGTAA Gene: BC0798: Putative sulfur reduction protein |
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Bacillus licheniformis DSM 13 Site: position = -44 score = 5.87619 sequence = ATACCTGTACGGGTAT Site: position = -93 score = 5.45211 sequence = ATACCCTTTAGGGTAT Gene: BLi02794: Putative sulfur reduction protein |
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Bacillus pumilus SAFR-032 Site: position = -75 score = 5.64009 sequence = ATACCCTTACCGGTAT Site: position = -35 score = 5.01996 sequence = ATACCCCCATAGGTAA Gene: BPUM_0190: Putative sulfur reduction protein |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -34 score = 5.22153 sequence = ATACCCGCAGGGGTAA Site: position = -101 score = 4.64209 sequence = ATACCCCCTATGGTAT Gene: BSU26540: Putative sulfur reduction protein |
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Geobacillus kaustophilus HTA426 Site: position = -69 score = 5.49032 sequence = ATACCCATATATGTAT Gene: GK2069: Putative sulfur reduction protein |
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Oceanobacillus iheyensis HTE831 Site: position = -116 score = 5.87619 sequence = ATACCTGTACGGGTAT Site: position = -45 score = 5.41997 sequence = ATACCTATGCGGGTAT Gene: OB2652: Putative sulfur reduction protein |
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Putative sulfur reduction protein |
| yrkF |
Gene: Aflv_2347: Rhodanese-like domain protein |
Gene: RBAM_005450: Rhodanese-like domain protein |
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Bacillus cereus ATCC 14579 Site: position = -29 score = 5.82996 sequence = ATACCCCTACAGGTAT Gene: BC0793: Rhodanese-like domain protein |
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Gene: BLi02793: Rhodanese-like domain protein |
Gene: BPUM_0192: Rhodanese-like domain protein |
Gene: BSU26530: Rhodanese-like domain protein |
Gene: GK2066: Rhodanese-like domain protein |
Gene: OB2651: Rhodanese-like domain protein |
|
Rhodanese-like domain protein |
| yrkH |
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Anoxybacillus flavithermus WK1 Site: position = -36 score = 4.8534 sequence = ATACCCTATAAGGTAT Gene: Aflv_2342: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein |
Gene: RBAM_005460: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein |
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Bacillus cereus ATCC 14579 Site: position = -20 score = 5.01996 sequence = ATACCTATGGGGGTAA Gene: BC0794: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein |
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Gene: BLi02792: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein |
Gene: BPUM_0193: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein |
Gene: BSU26510: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein |
*2
Geobacillus kaustophilus HTA426 Site: position = -22 score = 4.56511 sequence = ATACATTAGGGGGTAT Gene: GK2065: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein Gene: GK2074: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein |
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Oceanobacillus iheyensis HTE831 Site: position = -86 score = 4.91349 sequence = ATACGTATGGGGGTAT Gene: OB2650: Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein |
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Zn-dependent hydroxyacylglutathione hydrolase / Rhodanese-like domain protein |
| yrkI |
Gene: Aflv_2345: Rhodanese-like domain protein |
Gene: RBAM_005470: Rhodanese-like domain protein |
Gene: BC0795: Rhodanese-like domain protein |
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Gene: BLi02791: Rhodanese-like domain protein |
Gene: BPUM_0194: Rhodanese-like domain protein |
Gene: BSU26500: Rhodanese-like domain protein |
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Geobacillus kaustophilus HTA426 Site: position = -52 score = 5.61866 sequence = ATACCCATAGGGGTAA Gene: GK2070: Rhodanese-like domain protein |
Gene: OB2649: Rhodanese-like domain protein |
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Rhodanese-like domain protein |
| yrkJ |
2
Anoxybacillus flavithermus WK1 Gene: Aflv_0287: Predicted permease Gene: Aflv_2344: Predicted permease |
Gene: RBAM_005480: Predicted permease |
Gene: BC0799: Predicted permease |
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Gene: BLi02790: Predicted permease |
Gene: BPUM_0195: Predicted permease |
Gene: BSU26490: Predicted permease |
Gene: GK2064: Predicted permease |
Gene: OB2648: Predicted permease |
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Predicted permease |
| ydfQ |
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Gene: BLi02789: Thioredoxin |
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Thioredoxin |
| Aflv_0285 |
Gene: Aflv_0285: Two component sensor histidine kinase |
Gene: RBAM_019780: Two component sensor histidine kinase |
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Gene: BLi02788: Two component sensor histidine kinase |
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Gene: GK2087: Two component sensor histidine kinase |
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Two component sensor histidine kinase |
| yvqC |
Gene: Aflv_0286: Two component transcriptional regulator, LuxR family |
Gene: RBAM_019770: Two component transcriptional regulator, LuxR family |
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Gene: BLi02787: Two component transcriptional regulator, LuxR family |
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Gene: GK2086: Two component transcriptional regulator, LuxR family |
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Two component transcriptional regulator, LuxR family |
| hmt2 |
*
Anoxybacillus flavithermus WK1 Site: position = -93 score = 4.52314 sequence = AATCCCCTATGGGTAT Gene: Aflv_0282: Sulfide-quinone reductase |
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Gene: BC3512: Sulfide-quinone reductase |
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Gene: BLi02786: Sulfide-quinone reductase |
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Geobacillus kaustophilus HTA426 Site: position = -91 score = 4.52314 sequence = AATCCCCTATGGGTAT Gene: GK2090: Sulfide-quinone reductase |
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Sulfide-quinone reductase |
| Aflv_0284 |
Gene: Aflv_0284: Rhodanese-like domain protein / Zn-dependent hydroxyacylglutathione hydrolase |
Gene: RBAM_019750: Rhodanese-like domain protein / Zn-dependent hydroxyacylglutathione hydrolase |
Gene: BC3511: Rhodanese-like domain protein / Zn-dependent hydroxyacylglutathione hydrolase |
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Gene: BLi02785: Rhodanese-like domain protein / Zn-dependent hydroxyacylglutathione hydrolase |
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Gene: GK2088: Rhodanese-like domain protein / Zn-dependent hydroxyacylglutathione hydrolase |
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Rhodanese-like domain protein / Zn-dependent hydroxyacylglutathione hydrolase |
| Aflv_0283 |
Gene: Aflv_0283: Hypothetical protein |
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Gene: GK2089: Hypothetical protein |
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Hypothetical protein |
| Aflv_2282 |
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Anoxybacillus flavithermus WK1 Site: position = -31 score = 5.35685 sequence = ATACCCATATACGTAT Gene: Aflv_2282: Rhodanese-like domain protein |
Gene: RBAM_005440: Rhodanese-like domain protein |
Gene: BC0796: Rhodanese-like domain protein |
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Gene: BPUM_0191: Rhodanese-like domain protein |
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Gene: GK2068: Rhodanese-like domain protein |
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Rhodanese-like domain protein |
| Aflv_2348 |
*2
Anoxybacillus flavithermus WK1 Gene: Aflv_1300: Rhodanese-like domain protein Site: position = -22 score = 5.52918 sequence = ATACCCTTATGAGTAT Site: position = -68 score = 5.04186 sequence = ATACTCATAGAGGTAA Gene: Aflv_2348: Rhodanese-like domain protein |
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Gene: BC0797: Rhodanese-like domain protein |
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Gene: GK2067: Rhodanese-like domain protein |
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Rhodanese-like domain protein |
| GK2076 |
Gene: Aflv_2346: NADH dehydrogenase (EC 1.6.99.3) |
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*
Geobacillus kaustophilus HTA426 Site: position = -103 score = 4.88759 sequence = ATACATATACACGTAT Site: position = -97 score = 5.19308 sequence = ATACACGTATATGTAT Gene: GK2076: NADH dehydrogenase (EC 1.6.99.3) |
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NADH dehydrogenase (EC 1.6.99.3) |
| grx |
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Anoxybacillus flavithermus WK1 Site: position = -50 score = 5.34017 sequence = ATACGTATAGGGGTAT Gene: Aflv_2343: Predicted glutaredoxin |
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Gene: GK2075: Predicted glutaredoxin |
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Predicted glutaredoxin |
| Aflv_0303 |
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Anoxybacillus flavithermus WK1 Site: position = -32 score = 4.61905 sequence = TTACACGTACTTGTAT Gene: Aflv_1299: CoA-disulfide reductase (EC 1.8.1.14) / Rhodanese domain protein |
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Bacillus cereus ATCC 14579 Site: position = -68 score = 5.84664 sequence = ATACCCATACAGGTAT Gene: BC0791: CoA-disulfide reductase (EC 1.8.1.14) / Rhodanese domain protein |
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Geobacillus kaustophilus HTA426 Site: position = -98 score = 5.47363 sequence = ATACATATAGGGGTAT Gene: GK2091: CoA-disulfide reductase (EC 1.8.1.14) / Rhodanese domain protein |
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CoA-disulfide reductase (EC 1.8.1.14) / Rhodanese domain protein |
| CRON 2. | ||||||||||||
| Aflv_1540 |
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Anoxybacillus flavithermus WK1 Site: position = -16 score = 5.66234 sequence = ATACACATATGGGTAT Gene: Aflv_1540: Rhodanese-like domain protein |
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Rhodanese-like domain protein |
| CRON 3. | ||||||||||||
| Aflv_1298 |
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Anoxybacillus flavithermus WK1 Site: position = -40 score = 5.33525 sequence = ATACCTATTAGGGTAT Gene: Aflv_1298: Rhodanese-like domain protein |
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Rhodanese-like domain protein |
| CRON 4. | ||||||||||||
| GK2072 |
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Geobacillus kaustophilus HTA426 Site: position = -56 score = 5.09067 sequence = ATACTATTAGGGGTAT Gene: GK2072: Rhodanese-like domain protein |
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Rhodanese-like domain protein |
| yrkD |
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Anoxybacillus flavithermus WK1 Site: position = -28 score = 5.20577 sequence = ATACTGATAAGGGTAT Gene: Aflv_1433: Transcriptional regulator, RcnR family |
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Bacillus amyloliquefaciens FZB42 Site: position = -127 score = 5.79147 sequence = ATACCTGTAAGGGTAT Gene: RBAM_005420: Transcriptional regulator, RcnR family |
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Bacillus cereus ATCC 14579 Site: position = -71 score = 5.02543 sequence = ATACCCTATAGGGTAT Gene: BC0792: Transcriptional regulator, RcnR family |
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Bacillus licheniformis DSM 13 Site: position = -184 score = 5.5122 sequence = ATACGCATAGGGGTAT Gene: BLi02795: Transcriptional regulator, RcnR family |
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Bacillus pumilus SAFR-032 Site: position = -46 score = 5.16718 sequence = ATACCGCTTAGGGTAT Gene: BPUM_0189: Transcriptional regulator, RcnR family |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -508 score = 5.37374 sequence = ATACCtaTggGGGTAT Gene: BSU26550: Transcriptional regulator, RcnR family |
Gene: GK2071: Transcriptional regulator, RcnR family |
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Oceanobacillus iheyensis HTE831 Site: position = -62 score = 5.80041 sequence = ATACCTATAGGGGTAT Gene: OB2653: Transcriptional regulator, RcnR family |
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Transcriptional regulator, RcnR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |