Regulog LiaR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | OmpR |
| Regulation mode: | activator |
| Biological process: | Cell wall-active antibiotics stress response |
| Effector: | LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - OmpR
- By effector - LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin)
- By pathway - Cell wall-active antibiotics stress response
| Genome | Genes | Operons |
|---|---|---|
| Anoxybacillus flavithermus WK1 | 5 | 1 |
| Bacillus amyloliquefaciens FZB42 | 6 | 1 |
| Bacillus cereus ATCC 14579 | 5 | 1 |
| Bacillus clausii KSM-K16 | 5 | 1 |
| Bacillus halodurans C-125 | 6 | 1 |
| Bacillus licheniformis DSM 13 | 6 | 1 |
| Bacillus pumilus SAFR-032 | 6 | 1 |
| Bacillus subtilis subsp. subtilis str. 168 | 6 | 1 |
| Geobacillus kaustophilus HTA426 | 5 | 1 |
| Oceanobacillus iheyensis HTE831 | 5 | 1 |
| Paenibacillus sp. JDR-2 | 3 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| liaI |
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Anoxybacillus flavithermus WK1 Site: position = -52 score = 5.54119 sequence = ATACGCCTTGAGTCGTAG Gene: Aflv_0168: Predicted membrane protein LiaI |
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Bacillus amyloliquefaciens FZB42 Site: position = -99 score = 5.08174 sequence = ATACGACTCCGGTCTGAT Gene: RBAM_030260: Predicted membrane protein LiaI |
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Bacillus cereus ATCC 14579 Site: position = -102 score = 4.73632 sequence = CTCGGTCTTAAGTCTGAG Gene: BC1435: Predicted membrane protein LiaI |
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Bacillus clausii KSM-K16 Site: position = -113 score = 4.91579 sequence = CTCAGCCTCTAGTCGCAG Gene: ABC3378: Predicted membrane protein LiaI |
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Bacillus halodurans C-125 Site: position = -98 score = 5.25959 sequence = CTCAGACTCAAGGCGGAG Gene: BH1195: Predicted membrane protein LiaI |
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Bacillus licheniformis DSM 13 Site: position = -99 score = 4.8098 sequence = ATACGACCCTGGTCGTAC Gene: BLi03497: Predicted membrane protein LiaI |
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Bacillus pumilus SAFR-032 Site: position = -100 score = 4.56973 sequence = TTACGACTCTGGTCGCAA Gene: BPUM_2968: Predicted membrane protein LiaI |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -99 score = 5.1555 sequence = ATACGACTCCGGTCTTAT Gene: BSU33130: Predicted membrane protein LiaI |
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Geobacillus kaustophilus HTA426 Site: position = -92 score = 5.64989 sequence = ATACGCCTCGAGTCGTAG Gene: GK0430: Predicted membrane protein LiaI |
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Oceanobacillus iheyensis HTE831 Site: position = -100 score = 4.7829 sequence = ATACACCTTAAGTCTTAG Gene: OB2826: Predicted membrane protein LiaI |
Gene: Pjdr2_1102: Predicted membrane protein LiaI |
Predicted membrane protein LiaI |
| liaH |
Gene: Aflv_0169: Protein LiaH, similar to phage shock protein A |
Gene: RBAM_030250: Protein LiaH, similar to phage shock protein A |
Gene: BC1436: Protein LiaH, similar to phage shock protein A |
Gene: ABC3377: Protein LiaH, similar to phage shock protein A |
Gene: BH1196: Protein LiaH, similar to phage shock protein A |
Gene: BLi03496: Protein LiaH, similar to phage shock protein A |
Gene: BPUM_2967: Protein LiaH, similar to phage shock protein A |
Gene: BSU33120: Protein LiaH, similar to phage shock protein A |
Gene: GK0431: Protein LiaH, similar to phage shock protein A |
Gene: OB2825: Protein LiaH, similar to phage shock protein A |
2
Paenibacillus sp. JDR-2 Gene: Pjdr2_1103: Protein LiaH, similar to phage shock protein A Gene: Pjdr2_1105: Protein LiaH, similar to phage shock protein A |
Protein LiaH, similar to phage shock protein A |
| liaG |
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Gene: RBAM_030240: Conserved membrane protein LiaG |
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Gene: BH1197: Conserved membrane protein LiaG |
Gene: BLi03495: Conserved membrane protein LiaG |
Gene: BPUM_2966: Conserved membrane protein LiaG |
Gene: BSU33110: Conserved membrane protein LiaG |
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Conserved membrane protein LiaG |
| liaF |
Gene: Aflv_0170: Inhibitor of LiaR-dependent gene expression LiaF |
Gene: RBAM_030230: Inhibitor of LiaR-dependent gene expression LiaF |
Gene: BC1437: Inhibitor of LiaR-dependent gene expression LiaF |
Gene: ABC3376: Inhibitor of LiaR-dependent gene expression LiaF |
Gene: BH1198: Inhibitor of LiaR-dependent gene expression LiaF |
Gene: BLi03494: Inhibitor of LiaR-dependent gene expression LiaF |
Gene: BPUM_2965: Inhibitor of LiaR-dependent gene expression LiaF |
Gene: BSU33100: Inhibitor of LiaR-dependent gene expression LiaF |
Gene: GK0432: Inhibitor of LiaR-dependent gene expression LiaF |
Gene: OB2824: Inhibitor of LiaR-dependent gene expression LiaF |
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Inhibitor of LiaR-dependent gene expression LiaF |
| liaS |
Gene: Aflv_0171: Two-component sensor histidine kinase sensing cell wall stress |
Gene: RBAM_030220: Two-component sensor histidine kinase sensing cell wall stress |
Gene: BC1438: Two-component sensor histidine kinase sensing cell wall stress |
Gene: ABC3375: Two-component sensor histidine kinase sensing cell wall stress |
Gene: BH1199: Two-component sensor histidine kinase sensing cell wall stress |
Gene: BLi03493: Two-component sensor histidine kinase sensing cell wall stress |
Gene: BPUM_2964: Two-component sensor histidine kinase sensing cell wall stress |
Gene: BSU33090: Two-component sensor histidine kinase sensing cell wall stress |
Gene: GK0433: Two-component sensor histidine kinase sensing cell wall stress |
Gene: OB2823: Two-component sensor histidine kinase sensing cell wall stress |
2
Paenibacillus sp. JDR-2 Gene: Pjdr2_4786: Two-component sensor histidine kinase sensing cell wall stress Gene: Pjdr2_1106: Two-component sensor histidine kinase sensing cell wall stress |
Two-component sensor histidine kinase sensing cell wall stress |
| liaR |
Gene: Aflv_0172: Two component transcriptional regulator, LuxR family |
Gene: RBAM_030210: Two component transcriptional regulator, LuxR family |
Gene: BC1439: Two component transcriptional regulator, LuxR family |
Gene: ABC3374: Two component transcriptional regulator, LuxR family |
Gene: BH1200: Two component transcriptional regulator, LuxR family |
Gene: BLi03492: Two component transcriptional regulator, LuxR family |
Gene: BPUM_2963: Two component transcriptional regulator, LuxR family |
Gene: BSU33080: Two component transcriptional regulator, LuxR family |
Gene: GK0434: Two component transcriptional regulator, LuxR family |
Gene: OB2822: Two component transcriptional regulator, LuxR family |
2
Paenibacillus sp. JDR-2 Gene: Pjdr2_4785: Two component transcriptional regulator, LuxR family Gene: Pjdr2_1107: Two component transcriptional regulator, LuxR family |
Two component transcriptional regulator, LuxR family |
| liaIF |
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Paenibacillus sp. JDR-2 Site: position = -115 score = 4.81885 sequence = CTCCGTCTCGAGACCGAT Gene: Pjdr2_4787: Predicted membrane protein LiaI / Inhibitor of LiaR-dependent gene expression LiaF |
Predicted membrane protein LiaI / Inhibitor of LiaR-dependent gene expression LiaF |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |