Regulog FMN - Pseudomonadaceae
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 3 | 1 |
| Pseudomonas entomophila L48 | 1 | 1 |
| Pseudomonas putida KT2440 | 1 | 1 |
| Pseudomonas syringae pv. tomato str. DC3000 | 1 | 1 |
| Pseudomonas fluorescens Pf-5 | 1 | 1 |
| Pseudomonas mendocina ymp | 3 | 1 |
| Pseudomonas stutzeri A1501 | 3 | 1 |
| Azotobacter vinelandii AvOP | 3 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| ribE2 |
*
Pseudomonas aeruginosa PAO1 Site: position = -347 score = 95.3 sequence = GTAACGTTCTCAGGG... Gene: PA4055: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: PSEEN0589: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: PP0515: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: PSPTO0691: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: PFL_5521: Riboflavin synthase alpha chain (EC 2.5.1.9) |
*
Pseudomonas mendocina ymp Site: position = -282 score = 102.04 sequence = GCAACGTTCTCAGGG... Gene: Pmen_3856: Riboflavin synthase alpha chain (EC 2.5.1.9) |
*
Pseudomonas stutzeri A1501 Site: position = -269 score = 62.98 sequence = TGAGCACTTCGAGGA... Gene: PST_0836: Riboflavin synthase alpha chain (EC 2.5.1.9) |
*
Azotobacter vinelandii AvOP Site: position = -273 score = 97.09 sequence = GACGTTCTCAGGGCG... Gene: Avin_06730: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Riboflavin synthase alpha chain (EC 2.5.1.9) |
| ribBA |
Gene: PA4054: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: PSEEN0590: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: PP_0516: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: PSPTO0692: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: PFL_5520: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: Pmen_3855: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: PST_0837: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: Avin_06740: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
| ribH |
Gene: PA4053: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: PSEEN0591: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: PP0517: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: PSPTO0693: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: PFL_5519: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: Pmen_3854: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: PST_0838: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: Avin_06750: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
| CRON 2. | |||||||||
| ribB |
|
*
Pseudomonas entomophila L48 Site: position = -223 score = 113.53 sequence = CAAGGGTCTTCAGGG... Gene: PSEEN0609: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Pseudomonas putida KT2440 Site: position = -223 score = 111.72 sequence = GGTCGGTCTTCAGGG... Gene: PP0530: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|
|
|
|
|
3,4-dihydroxy-2-butanone 4-phosphate synthase |
| CRON 3. | |||||||||
| ribH2 |
|
|
|
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -301 score = 100.31 sequence = GTAACGTTCTCAGGG... Gene: PSPTO1839: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
*
Pseudomonas fluorescens Pf-5 Site: position = -291 score = 104.58 sequence = AACGTTCTCAGGGCG... Gene: PFL_4508: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
|
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6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |