Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog ykkC-yxkD - Pseudomonadaceae

Properties
Regulator type: RNA regulatory element
Name: ykkC-yxkD
RFAM: RF00442
Regulation mode:
Biological process: Multidrug resistance
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48
Pseudomonas putida KT2440
Pseudomonas syringae pv. tomato str. DC3000 7 1
Pseudomonas fluorescens Pf-5
Pseudomonas mendocina ymp 7 3
Pseudomonas stutzeri A1501 5 2
Azotobacter vinelandii AvOP
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
uctB2
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_4500: ABC transporter, periplasmic substrate-binding protein
*
Pseudomonas stutzeri A1501

Site:
position = -152
score = 83.14
sequence = CTTCAAGGAGAACTA...

Gene: PST_2003: ABC transporter, periplasmic substrate-binding protein
 
Azotobacter vinelandii AvOP
ABC transporter, periplasmic substrate-binding protein
 
CRON 2.
uctB1
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -165
score = 93.79
sequence = CAATAGCCGACTAGG...

Gene: PSPTO4238: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein
 
Pseudomonas fluorescens Pf-5
*3
Pseudomonas mendocina ymp

Site:
position = -172
score = 76.2
sequence = AGAAATGGCCGACTA...

Gene: Pmen_1366: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein

Site:
position = -168
score = 95.41
sequence = CGAAATGGATGACTA...

Gene: Pmen_1361: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein

Gene: Pmen_4500: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein
 
Pseudomonas stutzeri A1501

Gene: PST_1992: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein
 
Azotobacter vinelandii AvOP
Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein
uctP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO4239: Urea carboxylase-related ABC transporter, permease protein
 
Pseudomonas fluorescens Pf-5
*
Pseudomonas mendocina ymp

Site:
position = -287
score = 90.34
sequence = GCCAATAGCCGGCTA...

Gene: Pmen_1365: Urea carboxylase-related ABC transporter, permease protein
*
Pseudomonas stutzeri A1501

Site:
position = -230
score = 92.36
sequence = CGAAATAGCCGACTA...

Gene: PST_2011: Urea carboxylase-related ABC transporter, permease protein
 
Azotobacter vinelandii AvOP
Urea carboxylase-related ABC transporter, permease protein
uctA
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO4240: Urea carboxylase-related ABC transporter, ATPase protein
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_1364: Urea carboxylase-related ABC transporter, ATPase protein
 
Pseudomonas stutzeri A1501

Gene: PST_2010: Urea carboxylase-related ABC transporter, ATPase protein
 
Azotobacter vinelandii AvOP
Urea carboxylase-related ABC transporter, ATPase protein
amt1
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO4241: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_1360: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Pseudomonas stutzeri A1501

Gene: PST_2009: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Azotobacter vinelandii AvOP
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
amt2
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO4242: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_1359: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Pseudomonas stutzeri A1501

Gene: PST_2008: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
 
Azotobacter vinelandii AvOP
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10)
ucaA
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO4243: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp

Gene: Pmen_1358: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ...
ucaB
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO4244: Allophanate hydrolase (EC 3.5.1.54)
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501

Gene: PST_2005: Allophanate hydrolase (EC 3.5.1.54)
 
Azotobacter vinelandii AvOP
Allophanate hydrolase (EC 3.5.1.54)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD