Regulog ykkC-yxkD - Pseudomonadaceae
| Regulator type: | RNA regulatory element |
| Name: | ykkC-yxkD |
| RFAM: | RF00442 |
| Regulation mode: | |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By RNA motif - ykkC-yxkD
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | ||
| Pseudomonas entomophila L48 | ||
| Pseudomonas putida KT2440 | ||
| Pseudomonas syringae pv. tomato str. DC3000 | 7 | 1 |
| Pseudomonas fluorescens Pf-5 | ||
| Pseudomonas mendocina ymp | 7 | 3 |
| Pseudomonas stutzeri A1501 | 5 | 2 |
| Azotobacter vinelandii AvOP |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| uctB2 |
|
|
|
|
|
Gene: Pmen_4500: ABC transporter, periplasmic substrate-binding protein |
*
Pseudomonas stutzeri A1501 Site: position = -152 score = 83.14 sequence = CTTCAAGGAGAACTA... Gene: PST_2003: ABC transporter, periplasmic substrate-binding protein |
|
ABC transporter, periplasmic substrate-binding protein |
| CRON 2. | |||||||||
| uctB1 |
|
|
|
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -165 score = 93.79 sequence = CAATAGCCGACTAGG... Gene: PSPTO4238: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein |
|
*3
Pseudomonas mendocina ymp Site: position = -172 score = 76.2 sequence = AGAAATGGCCGACTA... Gene: Pmen_1366: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein Site: position = -168 score = 95.41 sequence = CGAAATGGATGACTA... Gene: Pmen_1361: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein Gene: Pmen_4500: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein |
Gene: PST_1992: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein |
|
Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein |
| uctP |
|
|
|
Gene: PSPTO4239: Urea carboxylase-related ABC transporter, permease protein |
|
*
Pseudomonas mendocina ymp Site: position = -287 score = 90.34 sequence = GCCAATAGCCGGCTA... Gene: Pmen_1365: Urea carboxylase-related ABC transporter, permease protein |
*
Pseudomonas stutzeri A1501 Site: position = -230 score = 92.36 sequence = CGAAATAGCCGACTA... Gene: PST_2011: Urea carboxylase-related ABC transporter, permease protein |
|
Urea carboxylase-related ABC transporter, permease protein |
| uctA |
|
|
|
Gene: PSPTO4240: Urea carboxylase-related ABC transporter, ATPase protein |
|
Gene: Pmen_1364: Urea carboxylase-related ABC transporter, ATPase protein |
Gene: PST_2010: Urea carboxylase-related ABC transporter, ATPase protein |
|
Urea carboxylase-related ABC transporter, ATPase protein |
| amt1 |
|
|
|
Gene: PSPTO4241: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
|
Gene: Pmen_1360: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Gene: PST_2009: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
|
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
| amt2 |
|
|
|
Gene: PSPTO4242: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
|
Gene: Pmen_1359: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
Gene: PST_2008: Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
|
Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) |
| ucaA |
|
|
|
Gene: PSPTO4243: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
|
Gene: Pmen_1358: Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
|
|
Urea carboxylase (EC 6.3.4.6) # [Carbamoyl-phosphate synthase large chain (EC 6.3.5.5), ATP binding domain/Biotin carboxylase (EC 6.3.4.14)/Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)/Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54)/Biotin carboxyl ... |
| ucaB |
|
|
|
Gene: PSPTO4244: Allophanate hydrolase (EC 3.5.1.54) |
|
|
Gene: PST_2005: Allophanate hydrolase (EC 3.5.1.54) |
|
Allophanate hydrolase (EC 3.5.1.54) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |