Regulog SAH_riboswitch - Pseudomonadaceae
| Regulator type: | RNA regulatory element |
| Name: | SAH_riboswitch |
| RFAM: | RF01057 |
| Regulation mode: | |
| Biological process: | Methionine metabolism |
| Effector: | S-adenosylhomocysteine |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By RNA motif - SAH_riboswitch
- By effector - S-adenosylhomocysteine
- By pathway - Methionine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 3 | 1 |
| Pseudomonas entomophila L48 | 2 | 1 |
| Pseudomonas putida KT2440 | ||
| Pseudomonas syringae pv. tomato str. DC3000 | 2 | 1 |
| Pseudomonas fluorescens Pf-5 | 2 | 1 |
| Pseudomonas mendocina ymp | 2 | 1 |
| Pseudomonas stutzeri A1501 | 2 | 1 |
| Azotobacter vinelandii AvOP | 1 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| ahcY |
*
Pseudomonas aeruginosa PAO1 Site: position = -128 score = 38.02 sequence = CCGTTCGAGGGGCGC... Gene: PA0432: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Pseudomonas entomophila L48 Site: position = -112 score = 32.62 sequence = CGAGGGGCGCTGCAG... Gene: PSEEN5037: Adenosylhomocysteinase (EC 3.3.1.1) |
|
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -132 score = 60.67 sequence = TGTCCGAGGGGCGCT... Gene: PSPTO5068: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Pseudomonas fluorescens Pf-5 Site: position = -127 score = 58.84 sequence = TGTCCGAGGGGCGCT... Gene: PFL_5798: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Pseudomonas mendocina ymp Site: position = -115 score = 57.26 sequence = CCCGTCCGAGGGGCG... Gene: Pmen_0449: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Pseudomonas stutzeri A1501 Site: position = -110 score = 61.0 sequence = CACCCGAGGGGCGCT... Gene: PST_3935: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Azotobacter vinelandii AvOP Site: position = -123 score = 65.05 sequence = CCCTTCCGAGGGGCG... Gene: Avin_03570: Adenosylhomocysteinase (EC 3.3.1.1) |
Adenosylhomocysteinase (EC 3.3.1.1) |
| PA0431 |
Gene: PA0431: Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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Guanosine polyphosphate pyrophosphohydrolases/synthetases |
| metF |
Gene: PA0430: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: PSEEN5038: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: PP4977: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: PSPTO5069: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: PFL_5799: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Pmen_0448: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: PST_3936: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Avin_03550: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |