Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SAH_riboswitch - Pseudomonadaceae

Properties
Regulator type: RNA regulatory element
Name: SAH_riboswitch
RFAM: RF01057
Regulation mode:
Biological process: Methionine metabolism
Effector: S-adenosylhomocysteine
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 3 1
Pseudomonas entomophila L48 2 1
Pseudomonas putida KT2440
Pseudomonas syringae pv. tomato str. DC3000 2 1
Pseudomonas fluorescens Pf-5 2 1
Pseudomonas mendocina ymp 2 1
Pseudomonas stutzeri A1501 2 1
Azotobacter vinelandii AvOP 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ahcY
*
Pseudomonas aeruginosa PAO1

Site:
position = -128
score = 38.02
sequence = CCGTTCGAGGGGCGC...

Gene: PA0432: Adenosylhomocysteinase (EC 3.3.1.1)
*
Pseudomonas entomophila L48

Site:
position = -112
score = 32.62
sequence = CGAGGGGCGCTGCAG...

Gene: PSEEN5037: Adenosylhomocysteinase (EC 3.3.1.1)
 
Pseudomonas putida KT2440
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -132
score = 60.67
sequence = TGTCCGAGGGGCGCT...

Gene: PSPTO5068: Adenosylhomocysteinase (EC 3.3.1.1)
*
Pseudomonas fluorescens Pf-5

Site:
position = -127
score = 58.84
sequence = TGTCCGAGGGGCGCT...

Gene: PFL_5798: Adenosylhomocysteinase (EC 3.3.1.1)
*
Pseudomonas mendocina ymp

Site:
position = -115
score = 57.26
sequence = CCCGTCCGAGGGGCG...

Gene: Pmen_0449: Adenosylhomocysteinase (EC 3.3.1.1)
*
Pseudomonas stutzeri A1501

Site:
position = -110
score = 61.0
sequence = CACCCGAGGGGCGCT...

Gene: PST_3935: Adenosylhomocysteinase (EC 3.3.1.1)
*
Azotobacter vinelandii AvOP

Site:
position = -123
score = 65.05
sequence = CCCTTCCGAGGGGCG...

Gene: Avin_03570: Adenosylhomocysteinase (EC 3.3.1.1)
Adenosylhomocysteinase (EC 3.3.1.1)
PA0431
 
Pseudomonas aeruginosa PAO1

Gene: PA0431: Guanosine polyphosphate pyrophosphohydrolases/synthetases
 
Pseudomonas entomophila L48
 
Pseudomonas putida KT2440
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Guanosine polyphosphate pyrophosphohydrolases/synthetases
metF
 
Pseudomonas aeruginosa PAO1

Gene: PA0430: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Pseudomonas entomophila L48

Gene: PSEEN5038: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Pseudomonas putida KT2440

Gene: PP4977: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO5069: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_5799: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Pseudomonas mendocina ymp

Gene: Pmen_0448: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Pseudomonas stutzeri A1501

Gene: PST_3936: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Azotobacter vinelandii AvOP

Gene: Avin_03550: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD