Regulog TPP - Pseudomonadaceae
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 1 | 1 |
| Pseudomonas entomophila L48 | 2 | 1 |
| Pseudomonas putida KT2440 | 4 | 2 |
| Pseudomonas syringae pv. tomato str. DC3000 | 2 | 1 |
| Pseudomonas fluorescens Pf-5 | 2 | 1 |
| Pseudomonas mendocina ymp | 1 | 1 |
| Pseudomonas stutzeri A1501 | 1 | 1 |
| Azotobacter vinelandii AvOP | 1 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| tenA |
|
|
*2
Pseudomonas putida KT2440 Gene: PP3186: Thiaminase II (EC 3.5.99.2) Site: position = -192 score = 69.05 sequence = GCGCCACCAAGGGGA... Gene: PP3185: Thiaminase II (EC 3.5.99.2) |
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Gene: PST_4128: Thiaminase II (EC 3.5.99.2) |
|
Thiaminase II (EC 3.5.99.2) |
| CRON 2. | |||||||||
| thiC |
*
Pseudomonas aeruginosa PAO1 Site: position = -227 score = 62.49 sequence = GGGGTTCTTGTCGGG... Gene: PA4973: Thiamin biosynthesis protein ThiC |
*
Pseudomonas entomophila L48 Site: position = -266 score = 83.28 sequence = CATGTTCTTGTCGGG... Gene: PSEEN4977: Thiamin biosynthesis protein ThiC |
*
Pseudomonas putida KT2440 Site: position = -262 score = 79.79 sequence = CATGTTCTTGTCGGG... Gene: PP4922: Thiamin biosynthesis protein ThiC |
*
Pseudomonas syringae pv. tomato str. DC3000 Site: position = -262 score = 86.04 sequence = CGCGTTCTTGTCGGG... Gene: PSPTO4976: Thiamin biosynthesis protein ThiC |
*
Pseudomonas fluorescens Pf-5 Site: position = -267 score = 86.37 sequence = GGTTCTTGTCGGGGT... Gene: PFL_0538: Thiamin biosynthesis protein ThiC |
*
Pseudomonas mendocina ymp Site: position = -202 score = 81.33 sequence = TAAGTTCTTGTCGGG... Gene: Pmen_0609: Thiamin biosynthesis protein ThiC |
*
Pseudomonas stutzeri A1501 Site: position = -204 score = 82.4 sequence = GGCGTTCTTGTCGGG... Gene: PST_3816: Thiamin biosynthesis protein ThiC |
*
Azotobacter vinelandii AvOP Site: position = -196 score = 73.07 sequence = CCGGTACTTGTCGGG... Gene: Avin_44600: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
| cytX |
|
Gene: PSEEN4976: Predicted hydroxymethylpyrimidine transporter CytX |
Gene: PP4921: Predicted hydroxymethylpyrimidine transporter CytX |
Gene: PSPTO4975: Predicted hydroxymethylpyrimidine transporter CytX |
Gene: PFL_0539: Predicted hydroxymethylpyrimidine transporter CytX |
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Predicted hydroxymethylpyrimidine transporter CytX |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |