Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TPP - Pseudomonadaceae

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Pseudomonas aeruginosa PAO1 1 1
Pseudomonas entomophila L48 2 1
Pseudomonas putida KT2440 4 2
Pseudomonas syringae pv. tomato str. DC3000 2 1
Pseudomonas fluorescens Pf-5 2 1
Pseudomonas mendocina ymp 1 1
Pseudomonas stutzeri A1501 1 1
Azotobacter vinelandii AvOP 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
tenA
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
*2
Pseudomonas putida KT2440

Gene: PP3186: Thiaminase II (EC 3.5.99.2)

Site:
position = -192
score = 69.05
sequence = GCGCCACCAAGGGGA...

Gene: PP3185: Thiaminase II (EC 3.5.99.2)
 
Pseudomonas syringae pv. tomato str. DC3000
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501

Gene: PST_4128: Thiaminase II (EC 3.5.99.2)
 
Azotobacter vinelandii AvOP
Thiaminase II (EC 3.5.99.2)
 
CRON 2.
thiC
*
Pseudomonas aeruginosa PAO1

Site:
position = -227
score = 62.49
sequence = GGGGTTCTTGTCGGG...

Gene: PA4973: Thiamin biosynthesis protein ThiC
*
Pseudomonas entomophila L48

Site:
position = -266
score = 83.28
sequence = CATGTTCTTGTCGGG...

Gene: PSEEN4977: Thiamin biosynthesis protein ThiC
*
Pseudomonas putida KT2440

Site:
position = -262
score = 79.79
sequence = CATGTTCTTGTCGGG...

Gene: PP4922: Thiamin biosynthesis protein ThiC
*
Pseudomonas syringae pv. tomato str. DC3000

Site:
position = -262
score = 86.04
sequence = CGCGTTCTTGTCGGG...

Gene: PSPTO4976: Thiamin biosynthesis protein ThiC
*
Pseudomonas fluorescens Pf-5

Site:
position = -267
score = 86.37
sequence = GGTTCTTGTCGGGGT...

Gene: PFL_0538: Thiamin biosynthesis protein ThiC
*
Pseudomonas mendocina ymp

Site:
position = -202
score = 81.33
sequence = TAAGTTCTTGTCGGG...

Gene: Pmen_0609: Thiamin biosynthesis protein ThiC
*
Pseudomonas stutzeri A1501

Site:
position = -204
score = 82.4
sequence = GGCGTTCTTGTCGGG...

Gene: PST_3816: Thiamin biosynthesis protein ThiC
*
Azotobacter vinelandii AvOP

Site:
position = -196
score = 73.07
sequence = CCGGTACTTGTCGGG...

Gene: Avin_44600: Thiamin biosynthesis protein ThiC
Thiamin biosynthesis protein ThiC
cytX
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48

Gene: PSEEN4976: Predicted hydroxymethylpyrimidine transporter CytX
 
Pseudomonas putida KT2440

Gene: PP4921: Predicted hydroxymethylpyrimidine transporter CytX
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO4975: Predicted hydroxymethylpyrimidine transporter CytX
 
Pseudomonas fluorescens Pf-5

Gene: PFL_0539: Predicted hydroxymethylpyrimidine transporter CytX
 
Pseudomonas mendocina ymp
 
Pseudomonas stutzeri A1501
 
Azotobacter vinelandii AvOP
Predicted hydroxymethylpyrimidine transporter CytX
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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