Regulog S15 - Pasteurellales
| Regulator type: | RNA regulatory element |
| Name: | S15 |
| RFAM: | RF00114 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Pasteurellales
- By RNA motif - S15
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Haemophilus influenzae Rd KW20 | 2 | 2 |
| Aggregatibacter aphrophilus NJ8700 | 1 | 1 |
| Pasteurella multocida subsp. multocida str. Pm70 | 1 | 1 |
| Mannheimia succiniciproducens MBEL55E | 1 | 1 |
| Actinobacillus succinogenes 130Z | 1 | 1 |
| Haemophilus somnus 2336 | 1 | 1 |
| Actinobacillus pleuropneumoniae serovar 7 str. AP76 | 1 | 1 |
| Haemophilus ducreyi 35000HP | 1 | 1 |
| Haemophilus parasuis SH0165 | 1 | 1 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| rpsO |
*2
Haemophilus influenzae Rd KW20 Site: position = -63 score = 102.42 sequence = GTCATCGCTGAGTTA... Gene: HI1328: SSU ribosomal protein S15p (S13e) Site: position = -61 score = 78.29 sequence = CACTTCCGTCATAAA... Gene: HI1468: SSU ribosomal protein S15p (S13e) |
*
Aggregatibacter aphrophilus NJ8700 Site: position = -63 score = 94.73 sequence = GTCGTCGCTGAATTA... Gene: NT05HA_2369: SSU ribosomal protein S15p (S13e) |
*
Pasteurella multocida subsp. multocida str. Pm70 Site: position = -63 score = 101.93 sequence = GTCGTAGCTGGATTA... Gene: PM0301: SSU ribosomal protein S15p (S13e) |
*
Mannheimia succiniciproducens MBEL55E Site: position = -63 score = 109.79 sequence = GTCGTAGCTGAATTA... Gene: MS0699: SSU ribosomal protein S15p (S13e) |
*
Actinobacillus succinogenes 130Z Site: position = -63 score = 105.06 sequence = ATCGTCGCTGAATTA... Gene: Asuc_1812: SSU ribosomal protein S15p (S13e) |
*
Haemophilus somnus 2336 Site: position = -66 score = 85.23 sequence = CTGTCATCGCTGAGT... Gene: HSM_0776: SSU ribosomal protein S15p (S13e) |
*
Actinobacillus pleuropneumoniae serovar 7 str. AP76 Site: position = -66 score = 93.11 sequence = GTCCTAGCTGAGTTA... Gene: APP7_1062: SSU ribosomal protein S15p (S13e) |
*
Haemophilus ducreyi 35000HP Site: position = -63 score = 85.13 sequence = GTCATAGCTGAGTTA... Gene: HD1738: SSU ribosomal protein S15p (S13e) |
*
Haemophilus parasuis SH0165 Site: position = -67 score = 105.69 sequence = GTGTCGTAGCTGAAT... Gene: HAPS_1131: SSU ribosomal protein S15p (S13e) |
SSU ribosomal protein S15p (S13e) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |