Regulog PreQ1 - Pasteurellales
| Regulator type: | RNA regulatory element |
| Name: | PreQ1 |
| RFAM: | RF00522 |
| Regulation mode: | |
| Biological process: | Queuosine biosynthesis |
| Effector: | Pre-queuosine1 |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Pasteurellales
- By RNA motif - PreQ1
- By effector - Pre-queuosine1
- By pathway - Queuosine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Haemophilus influenzae Rd KW20 | 3 | 1 |
| Aggregatibacter aphrophilus NJ8700 | 3 | 2 |
| Pasteurella multocida subsp. multocida str. Pm70 | 3 | 1 |
| Mannheimia succiniciproducens MBEL55E | 3 | 1 |
| Actinobacillus succinogenes 130Z | 3 | 1 |
| Haemophilus somnus 2336 | ||
| Actinobacillus pleuropneumoniae serovar 7 str. AP76 | 3 | 1 |
| Haemophilus ducreyi 35000HP | 3 | 1 |
| Haemophilus parasuis SH0165 | 3 | 1 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| queC |
*
Haemophilus influenzae Rd KW20 Site: position = -47 score = 41.98 sequence = ACCCCCCGTAGTTCG... Gene: HI1191: Queuosine Biosynthesis QueC ATPase |
*
Aggregatibacter aphrophilus NJ8700 Site: position = -47 score = 48.81 sequence = CATCTGTGGTTCGCA... Gene: NT05HA_0238: Queuosine Biosynthesis QueC ATPase |
*
Pasteurella multocida subsp. multocida str. Pm70 Site: position = -70 score = 41.8 sequence = TTTCATAGTGGTTCG... Gene: PM0186: Queuosine Biosynthesis QueC ATPase |
*
Mannheimia succiniciproducens MBEL55E Site: position = 41 score = 54.97 sequence = AATTCGTGGTTCGAA... Gene: MS1855: Queuosine Biosynthesis QueC ATPase |
*
Actinobacillus succinogenes 130Z Site: position = -46 score = 55.14 sequence = TCATCGTGGTTCGCA... Gene: Asuc_2017: Queuosine Biosynthesis QueC ATPase |
|
*
Actinobacillus pleuropneumoniae serovar 7 str. AP76 Site: position = -64 score = 33.4 sequence = CACTCGTGGTTCGAA... Gene: APP7_1153: Queuosine Biosynthesis QueC ATPase |
*
Haemophilus ducreyi 35000HP Site: position = -65 score = 18.25 sequence = TCGTGGTTCGAAAAC... Gene: HD0558: Queuosine Biosynthesis QueC ATPase |
*
Haemophilus parasuis SH0165 Site: position = -49 score = 46.42 sequence = TTCAACCGTGGTTCG... Gene: HAPS_1387: Queuosine Biosynthesis QueC ATPase |
Queuosine Biosynthesis QueC ATPase |
| queD |
Gene: HI1190: Queuosine biosynthesis QueD, PTPS-I |
*
Aggregatibacter aphrophilus NJ8700 Site: position = -149 score = 40.3 sequence = TCAATTTGTAGTTCG... Gene: NT05HA_0382: Queuosine biosynthesis QueD, PTPS-I |
Gene: PM0185: Queuosine biosynthesis QueD, PTPS-I |
Gene: MS1856: Queuosine biosynthesis QueD, PTPS-I |
Gene: Asuc_2018: Queuosine biosynthesis QueD, PTPS-I |
|
Gene: APP7_1154: Queuosine biosynthesis QueD, PTPS-I |
Gene: HD0557: Queuosine biosynthesis QueD, PTPS-I |
Gene: HAPS_1386: Queuosine biosynthesis QueD, PTPS-I |
Queuosine biosynthesis QueD, PTPS-I |
| queE |
Gene: HI1189: Queuosine Biosynthesis QueE Radical SAM |
Gene: NT05HA_0381: Queuosine Biosynthesis QueE Radical SAM |
Gene: PM0184: Queuosine Biosynthesis QueE Radical SAM |
Gene: MS1857: Queuosine Biosynthesis QueE Radical SAM |
Gene: Asuc_2019: Queuosine Biosynthesis QueE Radical SAM |
|
Gene: APP7_1155: Queuosine Biosynthesis QueE Radical SAM |
Gene: HD0556: Queuosine Biosynthesis QueE Radical SAM |
Gene: HAPS_1385: Queuosine Biosynthesis QueE Radical SAM |
Queuosine Biosynthesis QueE Radical SAM |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |