Regulog SAH_riboswitch - Mycobacteriaceae
| Regulator type: | RNA regulatory element |
| Name: | SAH_riboswitch |
| RFAM: | RF01057 |
| Regulation mode: | |
| Biological process: | Methionine metabolism |
| Effector: | S-adenosylhomocysteine |
| Phylum: | Actinobacteria |
Member of regulog collections
- By taxonomy - Mycobacteriaceae
- By RNA motif - SAH_riboswitch
- By effector - S-adenosylhomocysteine
- By pathway - Methionine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Mycobacterium tuberculosis H37Rv | ||
| Mycobacterium leprae TN | ||
| Mycobacterium marinum M | 1 | 1 |
| Mycobacterium avium 104 | 1 | 1 |
| Mycobacterium sp. JLS | 1 | 1 |
| Mycobacterium vanbaalenii PYR-1 | ||
| Mycobacterium flavescens PYR-GCK | 1 | 1 |
| Mycobacterium smegmatis str. MC2 155 | 1 | 1 |
| Mycobacterium abscessus ATCC 19977 | 1 | 1 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| metH |
|
|
*
Mycobacterium marinum M Site: position = -95 score = 20.48 sequence = GGGTCGAGAGGCGTT... Gene: MMAR_4825: 5-methyltetrahydrofolate--homocysteine methyltransferase, MetH |
*
Mycobacterium avium 104 Site: position = -93 score = 28.17 sequence = TGGTCGAGAGGCGTT... Gene: MAV_2379: 5-methyltetrahydrofolate--homocysteine methyltransferase, MetH |
*
Mycobacterium sp. JLS Site: position = -107 score = 23.52 sequence = TCTGGTCGAGAGGCG... Gene: Mjls_3161: 5-methyltetrahydrofolate--homocysteine methyltransferase, MetH |
Gene: Mvan_3474: 5-methyltetrahydrofolate--homocysteine methyltransferase, MetH |
*
Mycobacterium flavescens PYR-GCK Site: position = -77 score = 26.19 sequence = GCGTCGAGAGGCGTT... Gene: Mflv_3053: 5-methyltetrahydrofolate--homocysteine methyltransferase, MetH |
*
Mycobacterium smegmatis str. MC2 155 Site: position = -94 score = 23.13 sequence = CCCGTCGAGAGGCGT... Gene: MSMEG_4185: 5-methyltetrahydrofolate--homocysteine methyltransferase, MetH |
*
Mycobacterium abscessus ATCC 19977 Site: position = -95 score = 22.73 sequence = TGGTCGAGAGGCGTT... Gene: MAB_2129: 5-methyltetrahydrofolate--homocysteine methyltransferase, MetH |
5-methyltetrahydrofolate--homocysteine methyltransferase, MetH |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |